| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,798,370 | (TTC)4→3 | coding (124‑126/405 nt) | stpA ← | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2798361 | 2798363 | 3 | 51 [0] | [0] 51 | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2798364 = | 0 (0.000) | 39 (1.590) | 32/78 | 0.0 | 100% | coding (132/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| ? | NC_000913 | = 2798360 | 0 (0.000) | coding (136/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity | |||||
TGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2798418‑2798364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagaagaaCAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGG < NC_000913/2798360‑2798313 TGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTG > 1:426306/1‑47 GAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTG > 1:2089412/1‑46 AAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGA < 1:1222910/49‑1 AAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAG < 1:1863902/48‑1 AAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAG < 1:1857268/48‑1 AAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAG < 1:426804/48‑1 AGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAA < 1:1438851/49‑1 GAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAG < 1:773323/49‑1 AAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGA < 1:2265199/49‑1 AATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA < 1:1052393/49‑1 ATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAAC < 1:2353903/49‑1 GCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAG > 1:822364/1‑49 CTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGC < 1:682777/49‑1 GAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGC < 1:26883/49‑1 GAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAG < 1:1732028/48‑1 GAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCA < 1:2315402/47‑1 AAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAG > 1:12987/1‑47 AAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAG > 1:1921824/1‑49 AAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGC > 1:80156/1‑49 AAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGC < 1:115455/49‑1 TCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTG > 1:1693814/1‑48 TCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTG > 1:1952769/1‑48 AGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAAC > 1:144447/1‑49 AGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAAC < 1:383173/49‑1 AGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAAC > 1:1367053/1‑49 AGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAAC < 1:1755030/49‑1 AGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAAC > 1:1751861/1‑49 GGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACT < 1:934067/49‑1 TTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGC < 1:1522064/49‑1 GTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGG > 1:95201/1‑46 TCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGA < 1:2070563/49‑1 TCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCA > 1:1897015/1‑47 TCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCA > 1:486454/1‑47 ACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGC < 1:1456648/49‑1 ACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAG < 1:151495/48‑1 CTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCG > 1:1074787/1‑49 AAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCA < 1:1966902/49‑1 AGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAG > 1:1581088/1‑49 AAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGG > 1:770986/1‑48 AAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAA < 1:2123211/49‑1 AAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAA < 1:740716/49‑1 AAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGA > 1:155187/1‑48 AAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGA > 1:65224/1‑48 GACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAA < 1:1622645/49‑1 GACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAA > 1:1722482/1‑48 ACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAA > 1:426602/1‑48 CGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAA > 1:1099157/1‑49 CGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAA < 1:672172/49‑1 GTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAAT < 1:1820289/49‑1 GAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAAT > 1:1463794/1‑47 AGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGC < 1:1845591/49‑1 GAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCA > 1:423377/1‑49 GAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCA > 1:326253/1‑49 AGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACC < 1:283602/49‑1 AGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACC > 1:2354698/1‑49 AGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACC > 1:2093196/1‑49 AACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTG > 1:1847776/1‑49 AACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTG < 1:2189929/49‑1 ACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGG < 1:2219460/49‑1 ACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGG < 1:1698943/49‑1 TGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2798418‑2798364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagaagaaCAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGG < NC_000913/2798360‑2798313 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |