| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,994,992 | Δ3,877 bp | [ygeL]–ygeQ | [ygeL], ygeN, ygeO, insD‑4, insC‑4, ygeP, ygeQ | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2994992 | 2998868 | 3877 | 56 [0] | [0] 54 | [ygeL]–ygeQ | [ygeL],ygeN,ygeO,insD‑4,insC‑4,ygeP,ygeQ |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2994991 | 0 (0.000) | 51 (1.750) | 38/92 | 0.0 | 100% | pseudogene (102/156 nt) | ygeL | protein YgeL |
| ? | NC_000913 | 2998869 = | 0 (0.000) | intergenic (‑41/+115) | ygeQ/glyU | protein YgeQ/tRNA‑Gly | |||||
TGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2994943‑2994991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACAA > NC_000913/2998869‑2998916 TGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCC > 1:735563/1‑48TGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCC > 1:635727/1‑48 TAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCA < 1:373940/48‑1 TAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCC < 1:1291604/47‑1 TAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCC < 1:1352980/47‑1 AGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACT > 1:389979/1‑49 GATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTT < 1:533391/49‑1 GATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACT < 1:154209/48‑1 GATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACT < 1:412269/48‑1 TTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTAT > 1:361432/1‑49 TTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATT > 1:256856/1‑49 TGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATT > 1:840706/1‑48 TTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTA < 1:1501610/48‑1 ACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAAC > 1:318844/1‑48 ACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAAC > 1:1234449/1‑48 CACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACA < 1:1326560/48‑1 CACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACA < 1:2097652/48‑1 CACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACA < 1:1498483/48‑1 ACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAAC > 1:321112/1‑49 ACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAAC < 1:1609800/49‑1 ACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAAC > 1:119504/1‑49 CGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGA < 1:2077242/49‑1 CGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTG > 1:263166/1‑48 CGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTG > 1:752060/1‑48 CGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTG < 1:1841375/48‑1 CTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAA < 1:317802/49‑1 CTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAA > 1:1487866/1‑48 TATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAA > 1:5728/1‑49 ATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAA > 1:90084/1‑48 GCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAG < 1:1457044/49‑1 CTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGG < 1:1210244/49‑1 CTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGG > 1:1548221/1‑49 TTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGT > 1:1289017/1‑49 TTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTG > 1:573780/1‑49 TTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTG > 1:542805/1‑49 TTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTG > 1:1620179/1‑49 TCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTT > 1:1706120/1‑48 CAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTA > 1:1671445/1‑49 GATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACC > 1:2010004/1‑49 GATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACC < 1:157402/49‑1 ATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCT > 1:1144857/1‑49 CTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGG > 1:2132810/1‑49 TTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGG > 1:1949500/1‑49 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTT > 1:39651/1‑49 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTG < 1:782352/45‑1 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTG < 1:1858589/45‑1 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCT < 1:1396553/44‑1 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCT < 1:1693594/44‑1 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCT < 1:1837863/44‑1 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTT < 1:1311297/39‑1 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTT < 1:1263758/39‑1 ATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTT < 1:1456644/48‑1 ATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTT < 1:177649/48‑1 TAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGT > 1:1398882/1‑49 GCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTT < 1:289727/48‑1 CCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACA < 1:692834/49‑1 CACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACAA < 1:2079616/49‑1 CACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACAA < 1:493022/49‑1 TGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2994943‑2994991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACAA > NC_000913/2998869‑2998916 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |