| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,184,782 | Δ6,916 bp | ubiK–yqiI | ubiK, ygiL, yqiG, insC‑5, insD‑5, yqiG, yqiH, yqiI | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3184782 | 3191697 | 6916 | 73 [0] | [0] 74 | ubiK–yqiI | ubiK,ygiL,yqiG,insC‑5,insD‑5,yqiG,yqiH,yqiI |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3184781 | 0 (0.000) | 70 (2.350) | 47/94 | 0.0 | 100% | intergenic (‑315/‑59) | ribB/ubiK | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/ubiquinone biosynthesis accessory factor UbiK |
| ? | NC_000913 | 3191698 = | 0 (0.000) | intergenic (+2/+41) | yqiI/glgS | putative fimbrial protein YqiI/surface composition regulator | |||||
CTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3184734‑3184781‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGC > NC_000913/3191698‑3191745 CTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATA < 1:261540/49‑1 TAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATAT > 1:1779396/1‑49 TGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTA < 1:139958/49‑1 TGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCT > 1:1547882/1‑48 ATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAAT < 1:1491941/49‑1 TTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATA < 1:140755/49‑1 AGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATAC < 1:1622346/48‑1 GCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAA < 1:24452/49‑1 GCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACA < 1:1170252/48‑1 GCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACA < 1:572772/48‑1 CGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAA > 1:2252249/1‑49 GGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAA > 1:968741/1‑48 GCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACA > 1:593922/1‑49 CAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC < 1:1962727/49‑1 CAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC > 1:812736/1‑49 CAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC < 1:1589617/49‑1 CAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC < 1:122574/49‑1 AGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACT < 1:1336194/49‑1 AGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACT < 1:653625/49‑1 AGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACT < 1:1916165/49‑1 GCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTA < 1:1680772/49‑1 CAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTA > 1:150071/1‑48 AACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAA > 1:1191000/1‑48 ACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAA < 1:1542766/49‑1 CGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAAC < 1:2091332/49‑1 CGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAAC < 1:1563390/49‑1 CGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAAC > 1:1026687/1‑49 CGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAAC < 1:866632/49‑1 CGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAAC < 1:825231/49‑1 CGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAAC < 1:2209317/49‑1 GCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCA > 1:359475/1‑49 GCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCA < 1:543897/49‑1 GCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCA < 1:2345839/49‑1 GCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCC < 1:1578162/48‑1 CTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT < 1:1861081/49‑1 CTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT > 1:689810/1‑49 CTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT > 1:21433/1‑49 CTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT > 1:2269991/1‑49 TTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT > 1:1255434/1‑48 TCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT > 1:1320389/1‑47 CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCA < 1:1870685/48‑1 CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCA < 1:907800/48‑1 ACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGG < 1:239488/49‑1 ACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGG < 1:2359805/49‑1 CATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGC > 1:2322013/1‑49 ATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCC > 1:1892566/1‑49 ATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT < 1:649247/49‑1 ATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT > 1:1386442/1‑49 TTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT > 1:1460834/1‑48 TTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT > 1:1319468/1‑48 CTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTA < 1:2074371/48‑1 TGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATA > 1:2212381/1‑49 TGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATA > 1:161582/1‑49 TGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATA > 1:1754988/1‑49 GGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT > 1:760261/1‑49 GTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATC < 1:1679852/49‑1 GTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT > 1:450623/1‑48 GTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT < 1:1091461/48‑1 TTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCA < 1:223700/49‑1 TTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCA < 1:2099237/49‑1 TTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCA < 1:2092837/49‑1 TTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT > 1:447758/1‑47 TTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT > 1:905246/1‑47 TTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAG > 1:1213088/1‑49 TTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAG > 1:2246653/1‑49 TATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAG < 1:2106792/48‑1 TATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAG < 1:495455/48‑1 TATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAG < 1:37968/48‑1 ATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTG > 1:1947773/1‑49 ATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGT < 1:1240726/48‑1 TATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGC < 1:1121236/49‑1 TATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTG < 1:1006636/48‑1 TATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTG < 1:1191088/48‑1 CTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3184734‑3184781‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGC > NC_000913/3191698‑3191745 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |