| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 46 [0] | [0] 46 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 46 (1.510) | 39/96 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
TCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362116‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG > NC_000913/3367643‑3367690 TCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA > 1:1208278/1‑49TCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA > 1:2217655/1‑49 CAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA > 1:990343/1‑48 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACA < 1:1792931/49‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC < 1:1222140/48‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC > 1:1943195/1‑48 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA < 1:2177783/47‑1 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT < 1:1407990/49‑1 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG > 1:1858756/1‑49 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:540222/1‑49 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG < 1:1933584/49‑1 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGG < 1:1040667/49‑1 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:2362937/1‑48 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:537359/1‑48 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA < 1:2005467/48‑1 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGAC < 1:889298/48‑1 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGA < 1:194452/48‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:1476235/49‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:1328476/49‑1 TGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC > 1:1481686/1‑49 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACT < 1:2105980/48‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATC < 1:710019/49‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:2156184/1‑48 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT < 1:810339/48‑1 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 1:2071380/1‑49 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 1:1878808/1‑48 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG < 1:1767762/48‑1 AACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA > 1:891498/1‑49 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCAT > 1:653760/1‑49 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC < 1:439891/49‑1 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC < 1:2109803/49‑1 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC > 1:1610310/1‑49 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC < 1:136891/49‑1 ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG < 1:767533/49‑1 ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG > 1:913069/1‑49 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT < 1:47030/49‑1 CAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:1213176/1‑48 CAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCACTCGTTT > 1:1068909/1‑48 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:2290654/1‑49 ATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:466134/1‑48 GAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:1474277/1‑49 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACG < 1:2358333/49‑1 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA > 1:279392/1‑49 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA > 1:2168505/1‑49 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG < 1:1890825/49‑1 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:803297/48‑1 TCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362116‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG > NC_000913/3367643‑3367690 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |