| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 24 [0] | [0] 24 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 22 (0.770) | 20/90 | 0.1 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3453877‑3453927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG > NC_000913/3469854‑3469900 AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAAC < 1:1220131/49‑1 TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCC < 1:317364/48‑1 TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATC < 1:1517795/47‑1 TCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCT < 1:38022/48‑1 TTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT > 1:1762881/1‑49 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTG < 1:900758/48‑1 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTG < 1:1974501/48‑1 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTG < 1:1610983/46‑1 ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAA < 1:187996/49‑1 ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAA < 1:1747523/49‑1 ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAA < 1:958168/48‑1 GCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAAC > 1:1260927/1‑49 GCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTG > 1:684089/1‑49 CGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGC < 1:66090/49‑1 GGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGC > 1:1682509/1‑48 ATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACA > 1:1312168/1‑48 TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:342294/1‑48 AGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:406876/1‑47 AATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGT < 1:1255589/49‑1 TCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC > 1:949781/1‑48 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC > 1:1358760/1‑49 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA < 1:1506163/48‑1 AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:280650/1‑49 ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG < 1:1738330/49‑1 ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG > 1:1260956/1‑49 AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3453877‑3453927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG > NC_000913/3469854‑3469900 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |