| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,761,993 | Δ8,250 bp | rhsA–yibV | rhsA, yibA, yibJ, yibG, yibS, yibV | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3761993 | 3770242 | 8250 | 33 [0] | [0] 32 | rhsA–yibV | rhsA,yibA,yibJ,yibG,yibS,yibV |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3761992 | 0 (0.000) | 30 (1.010) | 28/94 | 0.0 | 100% | intergenic (‑37/‑191) | yibF/rhsA | glutathione transferase‑like protein YibF/rhs element protein RhsA |
| ? | NC_000913 | 3770243 = | 0 (0.000) | coding (1137/1137 nt) | yibH | inner membrane protein YibH | |||||
GACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3761944‑3761992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAG > NC_000913/3770243‑3770290 GACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC > 1:1101290/1‑49 ACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCT < 1:1875669/49‑1 TTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATG < 1:2270217/49‑1 CATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGAT < 1:1983066/48‑1 ATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCC < 1:1820139/49‑1 ATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATC < 1:265080/48‑1 TGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCA < 1:943292/49‑1 CCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAA < 1:866800/48‑1 GAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATA < 1:548009/49‑1 GAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAAT > 1:2068116/1‑48 GAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAAT > 1:1377529/1‑48 AGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAA < 1:2278793/49‑1 CTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGAT < 1:2150553/49‑1 CTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGA < 1:1349934/48‑1 TGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAAT > 1:1764295/1‑49 GTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAAT < 1:2362653/48‑1 TGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATG > 1:480682/1‑48 GCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCA > 1:1776158/1‑49 CGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCA < 1:1415056/48‑1 AGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATC > 1:197307/1‑48 AAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGC > 1:272679/1‑49 AAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCT < 1:1694598/49‑1 AATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGG < 1:1666370/49‑1 ATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGT > 1:179223/1‑49 AGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTC > 1:854174/1‑49 AGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATT < 1:178615/48‑1 TATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCT > 1:1693039/1‑48 TGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAG < 1:169031/49‑1 TGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTA < 1:460146/48‑1 GGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAG > 1:1832007/1‑48 GGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAG > 1:120804/1‑48 CTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAG > 1:448153/1‑49 CTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAG > 1:852826/1‑49 GACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3761944‑3761992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAG > NC_000913/3770243‑3770290 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |