| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,496,676 | Δ53,036 bp | intB–fimH | 54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4496676 | 4549711 | 53036 | 26 [0] | [0] 26 | intB–fimH | intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4496675 | 0 (0.000) | 25 (0.840) | 24/94 | 0.1 | 100% | intergenic (+186/‑75) | leuX/intB | tRNA‑Leu/KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | 4549712 = | 0 (0.000) | intergenic (+2/+241) | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter | |||||
AGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCT > NC_000913/4549665‑4549759 | ggtatttccggttcgataatgcttgtaccaacagggagggaatacgag > 1:1921642‑M2/48‑48 (MQ=255) gtatttccggttcgataatgcttgtaccaacagggagggaatacgaga < 1:947245‑M2/2‑1 (MQ=255) gtatttccggttcgataatgcttgtaccaacagggagggaatacgaga > 1:1718225‑M2/47‑48 (MQ=255) tatttccggttcgataatgcttgtaccaacagggagggaatacgaGaaa > 1:64403‑M2/46‑49 (MQ=255) tttccggttcgataatgcttgtaccaacagggagggaatacgaGAAATc < 1:920401‑M2/6‑1 (MQ=255) ttccggttcgataatgcttgtaccaacagggagggaatacgaGAAATca > 1:220408‑M2/43‑49 (MQ=255) ccggttcgataatgcttgtaccaacagggagggaatacgaGAAATca > 1:1887473‑M2/41‑47 (MQ=255) gttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGa < 1:90617‑M2/12‑1 (MQ=255) gttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGa > 1:756023‑M2/38‑49 (MQ=255) tcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACa > 1:415091‑M2/36‑49 (MQ=255) cgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAt > 1:453968‑M2/35‑49 (MQ=255) ataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTg > 1:445639‑M2/33‑49 (MQ=255) taatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGc < 1:1353061‑M2/18‑1 (MQ=255) gcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAAt > 1:1549574‑M2/28‑49 (MQ=255) cttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAAt < 1:1247688‑M2/22‑1 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCt < 1:939439‑M2/25‑1 (MQ=255) ccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGt < 1:697069‑M2/28‑1 (MQ=255) aacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACg > 1:1978886‑M2/19‑49 (MQ=255) acagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACg > 1:11284‑M2/18‑48 (MQ=255) gagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAatat < 1:2309558‑M2/37‑1 (MQ=255) gagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAatat > 1:1276243‑M2/13‑49 (MQ=255) agggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAatat > 1:1673382‑M2/12‑48 (MQ=255) agggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAatat > 1:579737‑M2/12‑48 (MQ=255) gaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAcc < 1:1303263‑M2/41‑1 (MQ=255) atacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTg < 1:879987‑M2/43‑1 (MQ=255) aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCt < 1:426900‑M2/48‑1 (MQ=255) | AGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCT > NC_000913/4549665‑4549759 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |