| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,847,724 | (C)6→7 | coding (285/1044 nt) | selD ← | selenide, water dikinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,847,718 | 1 | . | C | 94.1% | 56.8 / ‑2.9 | 17 | coding (291/1044 nt) | selD | selenide, water dikinase |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (9/7); total (9/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AAGTTTGTTAATCGGCCAGCCGAGGATCGCAATCGCCATAATCGGTTTG‑C‑CCCCCATCGCGAAGATATCGCTGATGGCGTTAGTCGCCGCAA > NC_000913/1847670‑1847761 | aaGTTTGTTAATCGGCCAGCCGAGGATCGCAATCGCCATAATCGGTTTg > 1:1369050/1‑49 (MQ=255)aaGTTTGTTAATCGGCCAGCCGAGGATCGCAATCGCCATAATCGGTTTg > 1:1939014/1‑49 (MQ=255) aGTTTGTTAATCGGCCAGCCGAGGATCGCAATCGCCATAATCGGTTTG‑c > 1:922489/1‑49 (MQ=255) gTTTGTTAATCGGCCAGCCGAGGATCGCAATCGCCATAATCGGTTTG‑c‑c > 1:291745/1‑49 (MQ=255) ttGTTAATCGGCCAGCCGAGGATCGCAATCGCCATAATCGGTTTG‑c‑ccc > 1:70578/1‑49 (MQ=255) ttAATCGGCCAGCCGAGGATCGCAATCGCCATAATCGGTTTG‑c‑ccccc > 1:590878/1‑48 (MQ=255) ttAATCGGCCAGCCGAGGATCGCAATCGCCATAATCGGTTTG‑c‑ccccc > 1:1028095/1‑48 (MQ=255) aTCGGCCAGCCGAGGATCGCAATCGCCATAATCGGTTTG‑CACCCCCATc < 1:2758705/49‑1 (MQ=38) ggCCAGCCGAGGATCGCAATCGCCATAATCGGTTTGCC‑CCCCCATcgc > 1:555904/1‑48 (MQ=38) cAGCCGAGGATCGCAATCGCCATAATCGGTTTGCC‑CCCCCATcgcg > 1:336015/1‑46 (MQ=38) cAGCCGAGGATCGCAATCGCCATAATCGGTTTGCC‑CCCCCATCGCGAAg < 1:1329658/49‑1 (MQ=38) cGAGGATCGCAATCGCCATAATCGGTTTGCC‑CCCCCATCGCGAAGatat < 1:627596/49‑1 (MQ=38) cGAGGATCGCAATCGCCATAATCGGTTTGCC‑CCCCCATCGCGAAGatat > 1:243254/1‑49 (MQ=38) gATCGCAATCGCCATAATCGGTTTGCC‑CCCCCATCGCGAAGATATCGCt > 1:2815144/1‑49 (MQ=38) gATCGCAATCGCCATAATCGGTTTGCC‑CCCCCATCGCGAAGATATCGCt > 1:954721/1‑49 (MQ=38) gCAATCGCCATAATCGGTTTGCC‑CCCCCATCGCGAAGATATCGCTGATg > 1:2442025/1‑49 (MQ=38) aaTCGCCATAATCGGTTTGCC‑CCCCCATCGCGAAGATATCGCTGATGGc > 1:1170958/1‑49 (MQ=39) gCCATAATCGGTTTGCC‑CCCCCATCGCGAAGATATCGCTGATGGCGTTa < 1:548881/49‑1 (MQ=39) cATAATCGGTTTGCC‑CCCCCATCGCGAAGATATCGCTGATGGCGTTAGt > 1:827230/1‑49 (MQ=39) aaTCGGTTTGCC‑CCCCCATCGCGAAGATATCGCTGATGGCGTTAGTcgc > 1:2220251/1‑49 (MQ=38) aTCGGTTTGCC‑CCCCCATCGCGAAGATATCGCTGATGGCGTTAGTcgcc < 1:1583369/49‑1 (MQ=38) aTCGGTTTGCC‑CCCCCATCGCGAAGATATCGCTGATGGCGTTAGTcgc < 1:146506/48‑1 (MQ=38) ggTTTGCC‑CCCCCATCGCGAAGATATCGCTGATGGCGTTAGTCGCCGCa < 1:583114/49‑1 (MQ=38) gTTTGCC‑CCCCCATCGCGAAGATATCGCTGATGGCGTTAGTCGCCGCaa < 1:2511002/49‑1 (MQ=38) | AAGTTTGTTAATCGGCCAGCCGAGGATCGCAATCGCCATAATCGGTTTG‑C‑CCCCCATCGCGAAGATATCGCTGATGGCGTTAGTCGCCGCAA > NC_000913/1847670‑1847761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |