| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 36 [0] | [0] 35 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 35 (0.970) | 26/94 | 0.1 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15340‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20564‑20610 AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTC > 1:1834013/1‑49 TGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCTAac > 1:1348364/1‑47 TGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACC < 1:1868276/49‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCTACCTC > 1:2696426/1‑49 AGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTG < 1:1677492/49‑1 AGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTG < 1:196192/49‑1 AGATATGCGAGCACCTGTAAAGTGGCGGGGAGAACTCTACCTCAAAGTG > 1:1615745/1‑49 GATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGT < 1:897214/49‑1 ATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTA < 1:1340323/49‑1 ATATGCGAGCACCTGTAAAGTGGCGGGGAACACCCTACCTCAATTTGTA > 1:2560074/1‑49 ATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCTCCATGTGTAT > 1:2045765/1‑48 ATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCTCAATTTGGAT > 1:2793483/1‑48 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCA < 1:787879/49‑1 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCA < 1:2131642/49‑1 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATC < 1:1420303/48‑1 CACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATAT < 1:1900036/49‑1 CCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCC < 1:2595877/49‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTC > 1:2190284/1‑49 AGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCT < 1:2427349/49‑1 GTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTT < 1:1942229/49‑1 GGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTG > 1:2322455/1‑49 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT < 1:1058407/49‑1 CGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTG < 1:2811497/49‑1 CGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTG < 1:1445615/49‑1 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGG > 1:625765/1‑49 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGG > 1:2148912/1‑49 GGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:997151/1‑49 GGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG < 1:1711315/49‑1 GGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG < 1:2033859/49‑1 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:1839507/1‑48 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC < 1:2477702/49‑1 CTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT < 1:2370543/49‑1 CTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT > 1:1813987/1‑49 CTCTACCTCAATGTGTAGCACAATATCCATATTCTTTGTGGGGGAGTCT > 1:1716551/1‑49 TCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:2192689/1‑49 TCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:2016623/1‑49 AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15340‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20564‑20610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |