| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 565,055 | Δ21,054 bp | [intD]–ompT | 37 genes [intD], xisD, exoD, renD, insE‑3, insF‑3, renD, emrE, ylcJ, ybcK, ybcL, ybcM, ylcH, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, nmpC, insH‑2, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, tfaX, appY, ompT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 565055 | 586108 | 21054 | 41 [0] | [0] 43 | [intD]–ompT | [intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 0 (0.000) | 38 (1.150) | 30/86 | 0.0 | 100% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 0 (0.000) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
TGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/565002‑565054‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAT > NC_000913/586109‑586155 TGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAAT > 1:1697243/1‑49 AATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCT < 1:2757039/49‑1 AATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCT < 1:641565/49‑1 AATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATC < 1:905028/48‑1 ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTT > 1:1670799/1‑49 AGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCT < 1:1072968/49‑1 AGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCT < 1:80658/49‑1 GCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCT > 1:1208033/1‑48 CCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCA > 1:2524993/1‑49 CAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCAT < 1:2860815/49‑1 AGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT > 1:2600222/1‑49 CTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTA < 1:1861243/49‑1 TGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATG > 1:1447790/1‑49 CCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGC < 1:428393/48‑1 CCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCC > 1:1606416/1‑49 CCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCC > 1:2774282/1‑49 CCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCC > 1:2180280/1‑49 AGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGT < 1:371483/49‑1 GGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTC > 1:1262546/1‑49 GTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCT < 1:173318/49‑1 TGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTT < 1:1118448/49‑1 TGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTA < 1:2201363/48‑1 CTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCG > 1:2756285/1‑49 TGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGT > 1:216134/1‑49 TGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGT > 1:2080448/1‑49 GAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTT > 1:711700/1‑49 AGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTT > 1:2402599/1‑49 AGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTT > 1:816821/1‑49 AGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTT > 1:316406/1‑49 AGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTT < 1:114981/48‑1 AGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGT < 1:535849/47‑1 AGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCG < 1:2792771/46‑1 TCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCG > 1:291330/1‑49 CATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGC > 1:837772/1‑49 CATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGC > 1:246717/1‑49 GGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTT > 1:1817572/1‑49 GAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTT < 1:1434969/48‑1 ACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCC < 1:1304734/49‑1 ACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCC > 1:839/1‑49 GGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTT < 1:334397/49‑1 GAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTT > 1:689292/1‑48 AAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCA > 1:1716322/1‑49 AAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCA > 1:445026/1‑49 CTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCA > 1:1194892/1‑48 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAT > 1:2582372/1‑48 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCA < 1:461786/45‑1 TGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/565002‑565054‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAT > NC_000913/586109‑586155 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |