| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 603,467 | Δ5,885 bp | [ybdG]–insL‑2 | [ybdG], nfsB, ybdF, ybdJ, ybdK, sokE, hokE, insL‑2 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 603467 | 609351 | 5885 | 38 [0] | [0] 37 | [ybdG]–insL‑2 | [ybdG],nfsB,ybdF,ybdJ,ybdK,sokE,hokE,insL‑2 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 603466 | 0 (0.000) | 37 (1.040) | 32/92 | 0.0 | 100% | coding (1198/1248 nt) | ybdG | miniconductance mechanosensitive channel YbdG |
| ? | NC_000913 | 609352 = | 0 (0.000) | intergenic (+175/+107) | insL‑2/entD | IS186/IS421 transposase/phosphopantetheinyl transferase EntD | |||||
CTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/603419‑603466‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCT > NC_000913/609352‑609397 CTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAG < 1:2702513/49‑1CTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAG > 1:557784/1‑49CTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGA < 1:2867101/48‑1 TGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAG > 1:976617/1‑48 CTTAAATGCCCCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTA < 1:850311/48‑1 CTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAA > 1:1390785/1‑49 AAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCC > 1:711927/1‑49 AAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATC < 1:1675567/48‑1 AATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCC > 1:2664952/1‑49 ATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCC < 1:1573297/49‑1 ATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCC < 1:1863518/49‑1 ATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCC > 1:213045/1‑49 ACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCA > 1:1845686/1‑48 CCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATAT > 1:426331/1‑49 CCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATAT > 1:2817485/1‑49 GCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCC > 1:1440778/1‑49 CAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGG > 1:782626/1‑49 AGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGT < 1:2505069/49‑1 AGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGT > 1:2312374/1‑49 AGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGT > 1:182275/1‑49 GAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTT < 1:1167068/49‑1 GAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTT > 1:86776/1‑49 CGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAG < 1:697312/49‑1 GAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGG < 1:1081936/49‑1 GAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGG > 1:163094/1‑49 GAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGG > 1:2652460/1‑49 ATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGT > 1:2530880/1‑48 TCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAG > 1:2101405/1‑48 TCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAG < 1:1325720/48‑1 ATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGAT > 1:339082/1‑49 ATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGAT > 1:2569910/1‑49 TTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATG < 1:813674/49‑1 CGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAA < 1:202808/49‑1 TGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCA > 1:1200271/1‑49 GGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCAC > 1:2685347/1‑49 GCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACC < 1:2244690/49‑1 GCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCAC < 1:1907304/48‑1 CGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCT > 1:1566120/1‑49 CTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/603419‑603466‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCT > NC_000913/609352‑609397 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |