| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 687,860 | Δ1,185 bp | IS5‑mediated | insH‑3 | insH‑3 |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 687860 | 689044 | 1185 | 47 [0] | [0] 48 | insH‑3 | insH‑3 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 687859 | 0 (0.000) | 45 (1.240) | 38/94 | 0.0 | 100% | noncoding (1187/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 689045 = | 0 (0.000) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
ATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/687812‑687859‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTAT > NC_000913/689045‑689092 ATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCC > 1:934087/1‑49ATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC < 1:1517062/48‑1 TCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCT < 1:1406492/49‑1 GTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTT < 1:803158/48‑1 TCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAG < 1:977080/49‑1 TCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAG < 1:2241452/49‑1 TCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAG < 1:1653465/49‑1 CTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGG > 1:1299033/1‑49 CAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGT < 1:1954385/47‑1 CAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGG < 1:2484535/46‑1 AACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAAC < 1:1994903/49‑1 CTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACAT < 1:216191/49‑1 TTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATT > 1:2009244/1‑48 TATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTT < 1:2260564/48‑1 ATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAG > 1:579796/1‑49 ATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAG > 1:2211914/1‑49 ATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTA < 1:2135198/48‑1 TTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGT < 1:958275/49‑1 GTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTT > 1:2272567/1‑49 GCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGG > 1:2310897/1‑49 CAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGG < 1:36778/48‑1 GTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAA > 1:2361605/1‑49 GTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATG < 1:2667765/48‑1 TGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTA < 1:2167478/49‑1 TGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTA < 1:1993836/49‑1 TGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGT < 1:969898/48‑1 TGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGT < 1:1196112/48‑1 GCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTA > 1:2595238/1‑48 CCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAA < 1:2462443/49‑1 CCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAA < 1:1005243/48‑1 CTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAG < 1:1477372/49‑1 CTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTA > 1:716347/1‑46 TGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTA > 1:2294259/1‑45 GTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGA > 1:2572181/1‑48 TTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATA > 1:588853/1‑49 TTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGAT < 1:649334/48‑1 TAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATAT > 1:2308674/1‑49 GGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGC < 1:392809/49‑1 GAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCT < 1:1530713/49‑1 AGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGT < 1:650181/49‑1 GGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTT < 1:223046/49‑1 GGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTT < 1:85001/49‑1 GGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTT > 1:2184143/1‑49 GTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTT < 1:537344/49‑1 GTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTT < 1:1855487/49‑1 TGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTT < 1:1643066/49‑1 CCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTAT > 1:1036460/1‑49 ATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/687812‑687859‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTAT > NC_000913/689045‑689092 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |