| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 765,208 | Δ5,405 bp | [mngR]–mngB | [mngR], mngA, mngB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 765208 | 770612 | 5405 | 38 [0] | [0] 35 | [mngR]–mngB | [mngR],mngA,mngB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 765207 | 0 (0.000) | 34 (0.940) | 25/94 | 0.1 | 100% | coding (669/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
| ? | NC_000913 | 770613 = | 0 (0.000) | intergenic (+2/‑845) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I | |||||
GCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/765158‑765207‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAG > NC_000913/770613‑770660 GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:934221/1‑49GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:127878/1‑49 CGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAT < 1:1035823/49‑1 CGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAT < 1:1849073/49‑1 GATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:127288/1‑47 ATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG > 1:2322770/1‑49 GATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGC > 1:527689/1‑48 ATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCA < 1:1007125/48‑1 TCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCA < 1:1185612/48‑1 TCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCA > 1:1095776/1‑48 TCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCA < 1:216876/48‑1 CGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAA > 1:745731/1‑49 GCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAAC < 1:1752784/49‑1 CGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAA < 1:82196/49‑1 CTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGC > 1:666377/1‑49 CTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGC > 1:2087755/1‑49 CTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGC > 1:2294932/1‑49 ATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCA > 1:1877012/1‑49 TCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCA < 1:2511454/48‑1 AGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACAT < 1:85290/49‑1 AGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACA < 1:2269864/48‑1 GGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATAT > 1:1507444/1‑49 aaTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGC > 1:295815/3‑49 aTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCG < 1:2372517/48‑1 TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGG > 1:2383081/1‑49 TAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCC < 1:558075/48‑1 TAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:109028/1‑47 TAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:1276453/1‑47 GTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGA < 1:2774822/49‑1 GTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAG < 1:1463854/48‑1 GTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAG < 1:2814366/48‑1 TCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAT > 1:2850733/1‑49 ATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTG > 1:255943/1‑49 ATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTG > 1:1931120/1‑49 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTG < 1:2532230/49‑1 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTT > 1:1476151/1‑48 ATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGAC > 1:2697628/1‑48 ATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAG > 1:517813/1‑49 GCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/765158‑765207‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAG > NC_000913/770613‑770660 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |