| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,197,137 | 25956 bp→CAGATAATTCAA | [ymfD]–[ymgI] | 42 genes [ymfD], ymfE, lit, intE, xisE, ymfH, ymfI, ymfJ, ymfK, ymfT, ymfL, ymfM, oweE, ymfN, aaaE, ymfR, beeE, jayE, ymfQ, ycfK, tfaP, tfaE, stfE, pinE, mcrA, icdC, iraM, ymgK, ymgL, ycgX, bluR, bluF, ycgZ, ymgA, ariR, ymgC, pdeG, ymgF, ycgH, ymgD, ymgG, [ymgI] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1197137 | 1223092 | 25956 | 43 [0] | [0] 45 | [ymfD]–[ymgI] | [ymfD],ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,icdC,iraM,ymgK,ymgL,ycgX,bluR,bluF,ycgZ,ymgA,ariR,ymgC,pdeG,ymgF,ycgH,ymgD,ymgG,[ymgI] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1197136 | 0 (0.000) | 32 (1.160) +CAGATAATTCAA |
23/72 | 0.0 | 100% | coding (397/666 nt) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| ? | NC_000913 | 1223093 = | 0 (0.000) | coding (71/174 nt) | ymgI | uncharacterized protein YmgI | |||||
AGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1197090‑1197136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATA > NC_000913/1223093‑1223140 |||||||||||| AGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCA < 1:1504431/49‑1 TCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGAT > 1:995269/1‑48 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTC < 1:1464519/49‑1 CTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCA > 1:1400170/1‑48 CTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCA > 1:1709166/1‑48 CTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCA > 1:725130/1‑48 CTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCA > 1:1736120/1‑48 TCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCA > 1:2120751/1‑47 TCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCA > 1:2085043/1‑47 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAA < 1:1388785/47‑1 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTG < 1:1447437/49‑1 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGT < 1:687104/48‑1 TTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGG > 1:2708773/1‑49 TTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCT > 1:386525/1‑49 TTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCT > 1:293813/1‑49 TTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGC < 1:2769671/48‑1 TAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTG > 1:1953105/1‑49 GTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTG < 1:2112812/49‑1 GTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTG < 1:1277104/49‑1 TAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGA < 1:2245688/49‑1 AATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT > 1:564084/1‑49 AATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT > 1:913397/1‑49 TCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGA > 1:391730/1‑47 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATA < 1:2524517/47‑1 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATA < 1:2516098/47‑1 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGA < 1:2226102/45‑1 TGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGG > 1:2732987/1‑48 TGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGG > 1:1719237/1‑48 GATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGA < 1:1074994/48‑1 GATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGA < 1:2822269/48‑1 ATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAAT < 1:2502896/49‑1 ATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAAT < 1:205939/49‑1 TGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATT < 1:2634855/49‑1 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTAT > 1:901816/1‑49 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTAT > 1:2205239/1‑49 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTAT > 1:314863/1‑49 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTT > 1:815007/1‑49 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATG < 1:252166/47‑1 AACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTT < 1:2585750/49‑1 CTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT > 1:866601/1‑48 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACG < 1:2445574/49‑1 AGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGT > 1:216550/1‑48 ATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAA < 1:1439259/49‑1 ATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAA > 1:1116585/1‑49 ATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGA < 1:770166/49‑1 TTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT > 1:777084/1‑46 TTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT > 1:252586/1‑46 CAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAA > 1:2543792/1‑49 CAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGA < 1:963352/48‑1 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAAT < 1:891397/49‑1 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAA > 1:2142621/1‑48 AAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATA < 1:334216/49‑1 AAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATA < 1:258930/49‑1 AAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAAT > 1:1804551/1‑48 |||||||||||| AGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1197090‑1197136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATA > NC_000913/1223093‑1223140 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |