| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,388,889 | Δ9,734 bp | ycjG–[uspE] | ycjG, mpaA, ymjC, ymjD, ycjY, pgrR, mppA, ynaI, insH‑4, ynaJ, [uspE] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1388889 | 1398622 | 9734 | 40 [0] | [0] 40 | ycjG–[uspE] | ycjG,mpaA,ymjC,ymjD,ycjY,pgrR,mppA,ynaI,insH‑4,ynaJ,[uspE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1388888 | 0 (0.000) | 39 (1.080) | 33/94 | 0.0 | 100% | intergenic (‑77/‑42) | tpx/ycjG | lipid hydroperoxide peroxidase/L‑Ala‑D/L‑Glu epimerase |
| ? | NC_000913 | 1398623 = | 0 (0.000) | intergenic (‑1/+151) | uspE/fnr | universal stress protein with a role cellular motility/DNA‑binding transcriptional dual regulator FNR | |||||
TCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1388843‑1388888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAT > NC_000913/1398623‑1398670 TCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTA > 1:214249/1‑47 CACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAG > 1:1170723/1‑49 ACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGG > 1:1196824/1‑49 ACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAG < 1:883513/48‑1 CACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGG > 1:236658/1‑49 ACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGT > 1:2526050/1‑49 ACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGT > 1:956740/1‑49 CTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCT < 1:2084981/49‑1 CTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCT > 1:1738851/1‑49 AGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCC > 1:1843616/1‑49 TATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTA > 1:88923/1‑48 ATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTAC < 1:1587966/48‑1 TGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAA < 1:2811154/49‑1 GCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAA > 1:1816987/1‑48 GCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAA > 1:2006334/1‑48 CTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAAC > 1:1671071/1‑48 CTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAAC > 1:1309715/1‑48 TAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAA > 1:1665052/1‑49 ACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACT < 1:2333551/49‑1 ACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAAC < 1:676126/48‑1 TGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGT > 1:1691230/1‑49 TGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGT > 1:2634410/1‑49 TCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCA < 1:740996/49‑1 TCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTC > 1:2627787/1‑48 TCAAT‑ACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAA > 1:959474/1‑49 AATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAAC < 1:1704893/49‑1 ATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACG > 1:1978908/1‑49 AACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACG > 1:404813/1‑47 AGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTG < 1:1713606/49‑1 GCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGT < 1:39771/49‑1 CAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTA < 1:2167285/49‑1 AAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAA > 1:2716296/1‑49 CGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTA < 1:1417075/49‑1 GCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTA > 1:1973904/1‑48 TATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAA > 1:2482293/1‑47 TATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAA > 1:1010558/1‑47 TTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGA < 1:336074/49‑1 TTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAG < 1:600645/48‑1 TTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAA > 1:1952871/1‑45 TACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAT > 1:1734948/1‑49 TCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1388843‑1388888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAT > NC_000913/1398623‑1398670 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |