Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,400,325 Δ81,931 bp [abgT]–[azoR] 87 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1400325 1482255 81931 25 [0] [0] 25 [abgT]–[azoR] [abgT],abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,ttcA,intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,ynaA,lomR,insH‑5,lomR,stfR,tfaR,pinR,ynaE,ynaM,ttcC,uspF,ompN,micC,ydbK,ydbJ,hslJ,ldhA,ydbH,ynbE,ydbL,feaR,feaB,tynA,paaZ,paaA,paaB,paaC,paaD,paaE,paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD‑2,insC‑2,ydbA,insI‑2,ydbA,pdxI,ydbD,ynbA,ynbB,ynbC,ynbD,[azoR]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 14003240 (0.000)23 (0.620) 20/96 0.3 100% coding (1450/1527 nt) abgT p‑aminobenzoyl glutamate:H(+) symporter
?NC_000913 1482256 = 0 (0.000)coding (605/606 nt) azoR FMN dependent NADH:quinone oxidoreductase

TATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1400277‑1400324
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGT  >  NC_000913/1482256‑1482300
                                                                                             
TATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTAT                                            >  1:2212456/1‑49
  TCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATG                                           <  1:249733/48‑1
  TCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTAT                                            <  1:1195296/47‑1
    GGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCA                                         <  1:260613/48‑1
    GGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATG                                           >  1:1293715/1‑46
           CGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAAT                                 <  1:1969899/49‑1
            GACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATG                                >  1:38669/1‑49
             ACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGC                               >  1:621666/1‑49
              CAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCT                              >  1:836836/1‑49
                AGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGT                            >  1:1432615/1‑49
                AGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGT                            <  1:2669328/49‑1
                AGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGT                            <  1:785059/49‑1
                 GATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC                           >  1:1569442/1‑49
                 GATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC                           <  1:28007/49‑1
                     CCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATG                       >  1:2567507/1‑49
                      CACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGG                      >  1:544897/1‑49
                      CACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGG                      >  1:732844/1‑49
                       ACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGC                     <  1:2372135/49‑1
                         GCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTG                   >  1:476419/1‑49
                                       CAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAG       <  1:2614566/49‑1
                                          CCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACT    >  1:382675/1‑49
                                            ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGT  <  1:1794374/49‑1
                                            ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGT  <  1:993677/49‑1
                                                                                             
TATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1400277‑1400324
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGT  >  NC_000913/1482256‑1482300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.