| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,101,397 | Δ36,321 bp | [wbbL]–wza | 34 genes [wbbL], insH‑7, wbbL, wbbK, wbbJ, wbbI, wbbH, glf, rfbX, rfbC, rfbA, rfbD, rfbB, galF, wcaM, wcaL, wcaK, wzxC, wcaJ, cpsG, cpsB, wcaI, gmm, fcl, gmd, wcaF, wcaE, wcaD, wcaC, wcaB, wcaA, wzc, wzb, wza |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2101397 | 2137717 | 36321 | 30 [0] | [0] 31 | [wbbL]–wza | [wbbL],insH‑7,wbbL,wbbK,wbbJ,wbbI,wbbH,glf,rfbX,rfbC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,wzxC,wcaJ,cpsG,cpsB,wcaI,gmm,fcl,gmd,wcaF,wcaE,wcaD,wcaC,wcaB,wcaA,wzc,wzb,wza |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2101396 | 0 (0.000) | 30 (0.830) | 25/94 | 0.1 | 100% | pseudogene (349/349 nt) | wbbL | interrupted rhamnosyltransferase WbbL |
| ? | NC_000913 | 2137718 = | 0 (0.000) | intergenic (‑475/‑184) | wza/yegH | outer membrane polysaccharide export protein Wza/inner membrane protein YegH | |||||
TAAAGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2101350‑2101396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCAC > NC_000913/2137718‑2137762 TAAAGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGT > 1:863187/1‑49 AAAGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTC > 1:36131/1‑49 AAAGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTC > 1:2689090/1‑49 AGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTCTC > 1:1675901/1‑49 GTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTCTC > 1:185324/1‑48 TATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTCTCCA > 1:2786776/1‑49 TAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTCTCCACA > 1:54495/1‑49 AATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTCTCCACAT < 1:373326/48‑1 TAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTCTCCACATGC > 1:2822388/1‑48 TCCATGCTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTT < 1:1821266/48‑1 CCATGCTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCT > 1:1824345/1‑49 TGCTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAA < 1:426884/49‑1 GCTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAA > 1:952079/1‑49 GCTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAA > 1:455236/1‑49 TTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAAT > 1:342774/1‑48 TATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAA > 1:774125/1‑49 ATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAAT > 1:1603348/1‑49 ATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATA < 1:2262804/47‑1 ATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGT > 1:1963695/1‑49 ATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGT > 1:1547312/1‑49 TGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGT < 1:1975560/48‑1 CTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTT < 1:2691226/49‑1 CTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTT < 1:2555014/48‑1 CTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTT > 1:2350971/1‑48 CTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTT > 1:1810234/1‑48 TTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTA > 1:1962654/1‑49 GCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATT < 1:1610574/49‑1 GCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATT < 1:891002/49‑1 CTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTA > 1:2395630/1‑49 ATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCAC > 1:856165/1‑49 TAAAGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2101350‑2101396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCAC > NC_000913/2137718‑2137762 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |