| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,286,401 | Δ3,780 bp | [yejO]–[yejO] | [yejO], insH‑8, [yejO] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2286401 | 2290180 | 3780 | 38 [0] | [0] 38 | [yejO]–[yejO] | [yejO],insH‑8,[yejO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2286400 | 0 (0.000) | 38 (1.030) | 31/96 | 0.0 | 100% | pseudogene (2515/2525 nt) | yejO | adhesin‑like autotransporter YejO |
| ? | NC_000913 | 2290181 = | 0 (0.000) | intergenic (‑1/‑319) | yejO/narP | adhesin‑like autotransporter YejO/DNA‑binding transcriptional dual regulator NarP | |||||
AGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2286353‑2286400‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTA > NC_000913/2290181‑2290226 AGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCT > 1:744140/1‑49 ACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCT > 1:1944035/1‑47 CGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGC > 1:1369452/1‑49 CGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGC > 1:191870/1‑49 GTGACACATCACATCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCT < 1:1854502/49‑1 GTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCT > 1:1347363/1‑49 ACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTT < 1:382072/48‑1 ACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTT < 1:2256265/48‑1 CATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATC < 1:1552522/49‑1 ATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCC > 1:2845489/1‑49 CACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTA > 1:2040454/1‑49 ACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTAT < 1:1107348/49‑1 ACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTA < 1:2499133/48‑1 CAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTAT > 1:1382543/1‑48 AGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATG > 1:2143963/1‑48 AGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATG > 1:2708074/1‑48 GCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAA < 1:1002817/49‑1 CCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAA < 1:2847679/49‑1 CTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAAT > 1:2443639/1‑49 CTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAAT < 1:735798/49‑1 TTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATT < 1:383427/47‑1 TATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATT > 1:2783518/1‑49 TATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAAT < 1:2094585/48‑1 TTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGC < 1:1596768/49‑1 GTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTA > 1:920523/1‑48 TTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTT < 1:737776/46‑1 TATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAA > 1:1908912/1‑47 TATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAA > 1:665912/1‑47 TCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAG < 1:678602/48‑1 AACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTG < 1:2477144/49‑1 AACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTG < 1:1664682/49‑1 ACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGG < 1:470739/49‑1 CGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGG > 1:2629163/1‑49 GTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGT < 1:851819/49‑1 GTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGG > 1:517700/1‑48 GTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGG > 1:2347223/1‑48 GTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGG > 1:1461385/1‑48 CTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTA > 1:956369/1‑47 AGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2286353‑2286400‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTA > NC_000913/2290181‑2290226 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |