| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 43 [0] | [0] 41 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 0 (0.000) | 40 (1.100) | 32/94 | 0.0 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2320097‑2320143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTA > NC_000913/2336633‑2336679 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATT < 1:1309807/48‑1ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT < 1:294926/47‑1ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT < 1:2101173/47‑1 TGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTC < 1:893637/49‑1 GCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCAC < 1:2797691/49‑1 CAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACC < 1:1458465/49‑1 CAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACC < 1:377738/49‑1 CAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACC < 1:2836455/49‑1 AATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCA < 1:1834795/49‑1 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCA > 1:933853/1‑49 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTG < 1:2352002/49‑1 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATT < 1:1997947/48‑1 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCAT < 1:2246693/47‑1 TGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGC < 1:966417/49‑1 TGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGC > 1:466329/1‑49 GGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGC > 1:2350864/1‑48 GGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGC > 1:2735011/1‑48 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCA < 1:830718/49‑1 ATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACAT > 1:871782/1‑49 TTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATT > 1:2302912/1‑49 TGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTC > 1:2674440/1‑49 GTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTC < 1:2285267/48‑1 CCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTG < 1:199437/49‑1 CCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTG < 1:193819/49‑1 ACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG > 1:1358794/1‑48 ACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG > 1:740558/1‑48 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATA < 1:2683292/49‑1 TACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:2830292/1‑49 TACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:1650885/1‑49 TACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:485551/1‑49 CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCA < 1:1975513/49‑1 CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCC < 1:353675/48‑1 TATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAG > 1:2500768/1‑49 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGC < 1:946878/48‑1 TGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCA > 1:485837/1‑49 GGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCA < 1:2170559/48‑1 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATT < 1:1032794/49‑1 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATT < 1:1437494/49‑1 TTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTT > 1:1721050/1‑49 TTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTT < 1:1323115/49‑1 ATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT > 1:2705092/1‑49 TATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT < 1:628343/48‑1 TTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTA < 1:1807912/48‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2320097‑2320143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTA > NC_000913/2336633‑2336679 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |