| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 61 [0] | [0] 64 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 57 (1.610) +GA |
41/92 | 0.0 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110632‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > NC_000913/3136382‑3136429 || AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAG < 1:2622998/49‑1 GGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGA < 1:135354/49‑1 GGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAG > 1:2134596/1‑48 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAA > 1:894592/1‑49 TTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACG > 1:2860058/1‑49 TTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACG > 1:401151/1‑49 TTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACG > 1:482056/1‑49 CTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC > 1:744440/1‑48 TCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA > 1:2032231/1‑49 CAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCAT > 1:993366/1‑49 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATT > 1:270050/1‑49 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCAT < 1:1165009/48‑1 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCC < 1:994391/46‑1 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCC < 1:1131531/46‑1 AGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT > 1:1229305/1‑48 AGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT > 1:1112512/1‑48 GCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTG > 1:1218857/1‑48 CACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAA > 1:757517/1‑49 CACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAA < 1:1173380/49‑1 ACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAAT > 1:346708/1‑49 ACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAAT < 1:2487309/49‑1 ACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAAT > 1:163698/1‑49 CTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATT > 1:1362201/1‑49 CTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATT < 1:350513/49‑1 CTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATT < 1:2485063/49‑1 CTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATT > 1:1073084/1‑49 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTAC < 1:455938/49‑1 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTAC < 1:2430289/49‑1 CATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTAC > 1:2541982/1‑48 ATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACG > 1:761294/1‑48 ATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACG > 1:319601/1‑48 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAA < 1:2526991/49‑1 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAA < 1:2815208/49‑1 CAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC > 1:2050012/1‑49 CAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC > 1:2552569/1‑49 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG < 1:2421520/49‑1 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC < 1:1255508/48‑1 ATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG > 1:284796/1‑48 TTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGA < 1:1312994/49‑1 TTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGA > 1:541445/1‑49 TTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGAC > 1:1928939/1‑49 TGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACG > 1:394764/1‑49 TGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGAC < 1:1118100/48‑1 TGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCA > 1:63476/1‑49 TGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCA > 1:1953875/1‑49 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATT < 1:2253582/49‑1 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:933847/1‑49 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT < 1:869764/49‑1 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT < 1:715774/49‑1 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTA < 1:1969268/48‑1 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCg > 1:1617417/1‑48 CGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAG < 1:247981/49‑1 GCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT < 1:1650698/49‑1 CAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT > 1:367281/1‑48 CAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT > 1:2144857/1‑48 AGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGA > 1:2837481/1‑49 CGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACT > 1:1356747/1‑49 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 1:1229132/1‑49 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 1:1040308/1‑49 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT < 1:1496744/49‑1 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC < 1:2684616/48‑1 AACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG < 1:269929/49‑1 || AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110632‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > NC_000913/3136382‑3136429 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |