| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,184,782 | Δ6,916 bp | ubiK–yqiI | ubiK, ygiL, yqiG, insC‑5, insD‑5, yqiG, yqiH, yqiI | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3184782 | 3191697 | 6916 | 106 [0] | [0] 105 | ubiK–yqiI | ubiK,ygiL,yqiG,insC‑5,insD‑5,yqiG,yqiH,yqiI |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3184781 | 0 (0.000) | 100 (2.760) | 54/94 | 0.0 | 100% | intergenic (‑315/‑59) | ribB/ubiK | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/ubiquinone biosynthesis accessory factor UbiK |
| ? | NC_000913 | 3191698 = | 0 (0.000) | intergenic (+2/+41) | yqiI/glgS | putative fimbrial protein YqiI/surface composition regulator | |||||
Only 100 of 106 total aligned reads displayed.
GCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3184733‑3184781‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGC > NC_000913/3191698‑3191745 GCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT < 1:208224/49‑1GCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT < 1:2266235/49‑1 CTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATA > 1:45397/1‑49 CTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATA < 1:1209739/49‑1 TAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATAT > 1:2610534/1‑49 TAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATAT > 1:734753/1‑49 ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATC > 1:2840181/1‑48 ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATAT < 1:1437133/47‑1 ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATAT < 1:2307165/47‑1 ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATAT < 1:2684928/47‑1 GATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAA > 1:2495238/1‑49 ATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAAT < 1:1138660/49‑1 ATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAA > 1:1217898/1‑48 ATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAA > 1:874533/1‑48 ATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAA > 1:1504880/1‑48 TTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATA < 1:82442/49‑1 AGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATAC > 1:936616/1‑48 AGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATAC > 1:1488378/1‑48 AGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATAC < 1:1026684/48‑1 GCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAA < 1:1987941/49‑1 GCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACA < 1:160048/48‑1 CGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAA > 1:1214373/1‑49 CGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAA > 1:1600824/1‑49 GGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAAC < 1:316664/49‑1 GGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAAC < 1:86172/49‑1 GGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAA > 1:1999698/1‑48 GGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAA > 1:1934271/1‑48 GCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACA < 1:915334/49‑1 CAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC > 1:2241810/1‑49 CAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC > 1:444775/1‑49 AGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACT < 1:883208/49‑1 AGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC > 1:342940/1‑48 AGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC > 1:2598203/1‑48 AGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC > 1:459192/1‑48 AGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC > 1:1417893/1‑48 GCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTA < 1:2346884/49‑1 CAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTA > 1:15962/1‑48 AACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAA < 1:2151140/49‑1 AACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAA > 1:681207/1‑48 AACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAA > 1:237696/1‑48 AACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAA > 1:250423/1‑48 AACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAA > 1:2722521/1‑48 CGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAAC > 1:17244/1‑49 GCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACG > 1:2861476/1‑49 GCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACG > 1:1572584/1‑49 GCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACG > 1:1989778/1‑49 CATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGG > 1:700958/1‑49 ATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGG > 1:740836/1‑49 TAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGC > 1:897149/1‑49 TAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGC > 1:1825052/1‑49 TAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGC < 1:710323/49‑1 TAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGC > 1:574903/1‑49 TAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGC < 1:1506595/49‑1 AGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGC > 1:41550/1‑48 GCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCA > 1:1519932/1‑49 GCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCA < 1:1278490/49‑1 GCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCA > 1:332760/1‑49 TTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT > 1:1206920/1‑48 TTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT > 1:1208631/1‑48 CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAG > 1:1662305/1‑49 CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCA < 1:1993520/48‑1 CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCA < 1:2241791/48‑1 CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCA < 1:2638778/48‑1 CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATC < 1:2485051/47‑1 ACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAG < 1:1199966/48‑1 CATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGC > 1:1943656/1‑49 ATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCC > 1:602679/1‑49 ATAATTCTGGGTTATATCTAATACAAACACTAAAACGGGCCATCAGGCC > 1:94598/1‑49 tcATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCC > 1:474981/3‑49 TAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCC > 1:1338992/1‑49 AATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCG > 1:2076195/1‑49 AATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCG > 1:2621057/1‑49 ATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT < 1:291581/49‑1 ATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT > 1:2156633/1‑49 ATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT > 1:598872/1‑49 TTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTT < 1:1304518/49‑1 TTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTT < 1:1274741/49‑1 TTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT > 1:1727706/1‑48 TTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT > 1:531990/1‑48 TTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT > 1:2203991/1‑48 TCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTA > 1:315967/1‑49 TCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTA > 1:222790/1‑49 CTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTA > 1:1208386/1‑48 CTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTA > 1:1123470/1‑48 TGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATA > 1:202108/1‑49 TGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATA > 1:2345214/1‑49 TGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATA > 1:2832222/1‑49 TGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATA > 1:2241168/1‑49 GTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT > 1:1605893/1‑48 GTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT > 1:1073902/1‑48 GTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATA < 1:2581020/47‑1 TTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAG > 1:1263951/1‑49 TATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGT > 1:2311020/1‑49 ATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTG > 1:535736/1‑49 ATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTG > 1:2448373/1‑49 ATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTG > 1:2448468/1‑49 TATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGC > 1:486228/1‑49 TATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGC > 1:2368811/1‑49 TATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGC > 1:1003880/1‑49 TATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTG < 1:1949103/48‑1 GCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3184733‑3184781‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGC > NC_000913/3191698‑3191745 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |