| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 83 [0] | [0] 82 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 82 (2.220) | 52/96 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362115‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG > NC_000913/3367643‑3367690 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTA < 1:1642343/49‑1CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTA < 1:67791/49‑1CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT > 1:92599/1‑48CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT > 1:2203714/1‑48 TCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA > 1:706412/1‑49 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACA < 1:140124/49‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC < 1:273188/48‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC < 1:32936/48‑1 ACATATTACATTCACTGTATTTATAACAACATCAATAAATACTAACAAT > 1:1305177/1‑49 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT < 1:2073135/49‑1 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG > 1:228838/1‑49 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC < 1:2822096/49‑1 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC > 1:242092/1‑49 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC < 1:2693044/49‑1 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC < 1:2765134/49‑1 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:1276413/1‑49 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:2523768/1‑49 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG < 1:1560285/49‑1 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG < 1:911460/49‑1 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGG < 1:739123/49‑1 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGAC < 1:2240406/48‑1 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:2276345/1‑47 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:335420/1‑47 ATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:2490444/1‑49 ATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG < 1:305245/49‑1 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGA < 1:526266/48‑1 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGA < 1:506015/48‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:901088/49‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:114513/49‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:296280/49‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:1584461/49‑1 TGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC > 1:2061596/1‑49 TGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC > 1:511090/1‑49 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTA > 1:444756/1‑49 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACT < 1:1214482/48‑1 ATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:534894/1‑49 ATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:1483800/1‑49 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATC < 1:1357668/49‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATC < 1:2014826/49‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATC < 1:776220/49‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:1600566/1‑48 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:2629450/1‑48 TTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:5545/1‑47 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG > 1:5613/1‑49 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 1:1940716/1‑49 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGC < 1:492433/49‑1 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGC < 1:1069190/49‑1 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGC < 1:477503/49‑1 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG < 1:2288160/48‑1 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 1:2047988/1‑48 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 1:1194980/1‑48 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCAT > 1:2046605/1‑49 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA < 1:2125605/48‑1 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT < 1:967238/49‑1 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC > 1:279979/1‑49 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC > 1:2670398/1‑49 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC < 1:2645729/49‑1 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC > 1:1034509/1‑49 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC < 1:961070/49‑1 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT < 1:1135836/49‑1 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT < 1:1843319/49‑1 ATCAATGAATACTAACAATGCCGGACAGGCGTACTATCAGGCATTCGTT > 1:876320/1‑49 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT < 1:2082568/49‑1 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:1148251/1‑49 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT < 1:1322694/49‑1 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:1736138/1‑49 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:269193/1‑49 ATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTAT < 1:1127070/49‑1 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATA > 1:557056/1‑49 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATA < 1:2131537/49‑1 GAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:86778/1‑49 GAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:2178434/1‑49 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:1051202/1‑48 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA < 1:952644/49‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT > 1:2210998/1‑49 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG < 1:1714427/49‑1 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG < 1:572669/49‑1 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG < 1:1637153/49‑1 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG > 1:1759273/1‑49 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG < 1:1799198/49‑1 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:2085425/48‑1 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:1071911/48‑1 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362115‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG > NC_000913/3367643‑3367690 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |