| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 40 [0] | [0] 41 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 38 (1.100) | 31/90 | 0.0 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3453877‑3453927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG > NC_000913/3469854‑3469900 AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAAC < 1:2360570/49‑1 TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA < 1:639592/49‑1 TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA > 1:2846060/1‑49 ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT < 1:2374939/48‑1 CCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAA > 1:211446/1‑49 CTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAAT < 1:1920703/49‑1 GTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCC > 1:1360737/1‑49 TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCC < 1:671062/49‑1 CTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT < 1:30621/48‑1 TTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT > 1:487411/1‑49 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTG < 1:1807817/46‑1 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTG < 1:1836759/46‑1 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTA < 1:2301589/49‑1 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGT < 1:1390203/48‑1 ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAA < 1:175590/48‑1 CGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAA < 1:2665687/49‑1 GCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTG < 1:2705766/49‑1 GCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTG > 1:850735/1‑49 CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAA > 1:704849/1‑48 GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA > 1:523013/1‑49 GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA > 1:3094/1‑49 ATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC < 1:2443299/49‑1 ATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC < 1:1777528/49‑1 TATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACA < 1:1413144/49‑1 TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:1838438/1‑48 TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:1384167/1‑48 GAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAG > 1:1904424/1‑49 GAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAG < 1:843667/49‑1 AATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGT > 1:1564862/1‑49 AATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGT > 1:1997735/1‑49 ATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTC < 1:1285586/49‑1 ATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTC > 1:832208/1‑49 TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC < 1:2455768/49‑1 TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC < 1:800794/49‑1 TCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC > 1:290893/1‑48 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC > 1:178452/1‑49 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC < 1:2453118/49‑1 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC > 1:2382401/1‑49 AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:2040052/1‑49 CATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCA < 1:1002452/49‑1 TTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG > 1:1931502/1‑48 AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3453877‑3453927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG > NC_000913/3469854‑3469900 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |