| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,496,676 | Δ53,036 bp | intB–fimH | 54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4496676 | 4549711 | 53036 | 53 [0] | [0] 53 | intB–fimH | intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4496675 | 0 (0.000) | 52 (1.440) | 39/94 | 0.0 | 100% | intergenic (+186/‑75) | leuX/intB | tRNA‑Leu/KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | 4549712 = | 0 (0.000) | intergenic (+2/+241) | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter | |||||
TGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4496628‑4496675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC > NC_000913/4549712‑4549758 TGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAG < 1:1890886/49‑1TGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAG < 1:1418725/49‑1 GGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAG > 1:987359/1‑48 GGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAG > 1:453036/1‑48 GTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGA < 1:908807/48‑1 ATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT > 1:414930/1‑49 TTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATC < 1:2755674/49‑1 TCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA < 1:887050/48‑1 CCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCAC < 1:956099/48‑1 CCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCAC < 1:778714/48‑1 CCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCAC < 1:2201545/48‑1 CCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCAC < 1:1907838/48‑1 CCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA > 1:1952409/1‑47 CGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAG < 1:2194615/49‑1 GGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGG < 1:2417130/49‑1 GGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAG > 1:2067442/1‑48 GTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA < 1:224074/49‑1 GTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA > 1:1438570/1‑49 TCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACA > 1:984337/1‑49 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATT > 1:2305247/1‑49 AATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 1:2767702/1‑48 AATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 1:1873571/1‑48 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCT > 1:915058/1‑48 TGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAA > 1:2382259/1‑49 TGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAA < 1:2381348/49‑1 TTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGC > 1:564174/1‑49 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTG > 1:422312/1‑49 TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG > 1:209868/1‑49 TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTG < 1:2178935/48‑1 CAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTAC < 1:2054994/49‑1 CAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTAC < 1:2422229/49‑1 AACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG < 1:1241927/49‑1 ACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG > 1:1426002/1‑48 ACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG > 1:2727771/1‑48 CAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGC > 1:1762962/1‑48 CAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGC > 1:1791259/1‑48 AGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA > 1:2279501/1‑49 GGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATA < 1:1312780/49‑1 GGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATA < 1:1385947/49‑1 AGGGAATACGAGAAGTCACAGGACATTGCTAATGCTGGTACGCAATATT < 1:1722306/49‑1 GGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTA > 1:2388718/1‑49 GGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTA < 1:244267/49‑1 GGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTA < 1:1177937/49‑1 AATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT > 1:2494676/1‑49 AATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT > 1:2529076/1‑49 TACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTG > 1:1421597/1‑48 ACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTG > 1:2691342/1‑47 CGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAG < 1:872187/49‑1 CGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAG > 1:2519594/1‑49 CGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAA < 1:268874/48‑1 GAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC > 1:438360/1‑49 GAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC > 1:1318841/1‑49 AGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC > 1:236607/1‑48 TGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4496628‑4496675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC > NC_000913/4549712‑4549758 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |