Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,555,491 Δ41,523 bp [yjiC]–lgoD 37 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4555491 4597013 41523 35 [0] [0] 34 [yjiC]–lgoD [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 45554900 (0.000)32 (0.880) 28/94 0.1 100% coding (831/831 nt) yjiC uncharacterized protein YjiC
?NC_000913 4597014 = 0 (0.000)intergenic (+2/+136) lgoD/opgB L‑galactonate oxidoreductase/phosphoglycerol transferase I

TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4555442‑4555490
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGG  >  NC_000913/4597014‑4597061
                                                                                                 
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT                                                  <  1:1235182/49‑1
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT                                                  <  1:2771981/49‑1
    GCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG                                               <  1:2313644/48‑1
       ATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC                                             >  1:173387/1‑47
       ATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC                                             >  1:2104270/1‑47
        TCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCG                                            <  1:2285707/47‑1
        TCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC                                             >  1:2224060/1‑46
           GTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT                                        >  1:396493/1‑48
            TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATT                                       <  1:940866/48‑1
            TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT                                        <  1:1963422/47‑1
            TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGA                                         <  1:1960070/46‑1
               AACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATT                                    >  1:327904/1‑48
                ACCTGAATCTTAGTACTCATTCTTCCTGTTAGTAAGGCGAGATTATTA                                   >  1:2862115/1‑48
                     AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTT                              <  1:971825/48‑1
                      ATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC                            <  1:73234/49‑1
                        GTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCA                          >  1:1745428/1‑49
                        GTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCA                          >  1:618162/1‑49
                         TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCAT                         >  1:1015502/1‑49
                         TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCAT                         >  1:1227518/1‑49
                           AGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG                        >  1:839053/1‑48
                             TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAG                     <  1:1355026/49‑1
                                TCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGT                  >  1:728665/1‑49
                                  ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCC                <  1:1538127/49‑1
                                   TTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCG               >  1:1978481/1‑49
                                     CTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGG             >  1:1465738/1‑49
                                     CTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGG             >  1:1382430/1‑49
                                     CTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGG              <  1:2415553/48‑1
                                        CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGG            <  1:2702348/47‑1
                                          TGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGT        >  1:670828/1‑49
                                            GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGT        <  1:1794248/47‑1
                                             TAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTT     <  1:687584/49‑1
                                             TAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTT     >  1:1851483/1‑49
                                              AGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTG    >  1:635568/1‑49
                                               GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCAGGGGAAGTGTTGG   <  1:1157241/49‑1
                                                TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGG  <  1:2827553/49‑1
                                                                                                 
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4555442‑4555490
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGG  >  NC_000913/4597014‑4597061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.