| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,626,183 | (GCG)3→2 | coding (272‑274/1383 nt) | radA → | DNA recombination protein |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4626176 | 4626178 | 3 | 15 [0] | [0] 16 | radA | DNA recombination protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4626179 = | 0 (0.000) | 12 (0.380) | 12/82 | 0.7 | 100% | coding (268/1383 nt) | radA | DNA recombination protein |
| ? | NC_000913 | = 4626175 | 0 (0.000) | coding (264/1383 nt) | radA | DNA recombination protein | |||||
CCCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4626231‑4626179‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgccTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTC < NC_000913/4626175‑4626128 CCCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGC < 1:1004187/49‑1 CCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCC < 1:2677807/49‑1 ACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCC > 1:1766317/1‑48 GTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTACG < 1:910303/49‑1 TTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGC < 1:1559052/49‑1 TTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGC > 1:2458392/1‑49 TACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCG > 1:1035980/1‑49 ATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACT > 1:338042/1‑49 GAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTT < 1:203770/49‑1 GCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATC > 1:2231991/1‑49 ACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCG > 1:2329626/1‑49 ACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCG < 1:1449795/49‑1 CCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGT < 1:1780533/47‑1 TGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGA > 1:2724526/1‑48 ACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAAC < 1:1838247/49‑1 CCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCA < 1:2715088/49‑1 GCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGC > 1:2353126/1‑49 CTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTC < 1:1279227/49‑1 CCCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4626231‑4626179‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgccTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTC < NC_000913/4626175‑4626128 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |