| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,761,993 | Δ8,250 bp | rhsA–yibV | rhsA, yibA, yibJ, yibG, yibS, yibV | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3761993 | 3770242 | 8250 | 42 [0] | [0] 40 | rhsA–yibV | rhsA,yibA,yibJ,yibG,yibS,yibV |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3761992 | 0 (0.000) | 40 (1.100) | 32/94 | 0.0 | 100% | intergenic (‑37/‑191) | yibF/rhsA | glutathione transferase‑like protein YibF/rhs element protein RhsA |
| ? | NC_000913 | 3770243 = | 0 (0.000) | coding (1137/1137 nt) | yibH | inner membrane protein YibH | |||||
GACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTC > NC_000913/3761944‑3762038 | gacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC > 1:1147102‑M1/1‑49 (MQ=255)gacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC > 1:1159326‑M1/1‑49 (MQ=255) acgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCt > 1:829809‑M1/1‑48 (MQ=255) acgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCt > 1:913699‑M1/1‑48 (MQ=255) acgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCt < 1:2671036‑M1/49‑2 (MQ=255) cgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtc < 1:1063726‑M1/49‑3 (MQ=255) gaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtca < 1:1184533‑M1/49‑4 (MQ=255) aGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaa > 1:2741958‑M1/1‑45 (MQ=255) aGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaa > 1:2577250‑M1/1‑45 (MQ=255) gTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaat < 1:2726386‑M1/49‑6 (MQ=255) tttCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaat > 1:757469‑M1/1‑43 (MQ=255) tttCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaat > 1:1397666‑M1/1‑43 (MQ=255) aTGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatc > 1:1752667‑M1/1‑39 (MQ=255) ccGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaa < 1:2599623‑M1/49‑14 (MQ=255) ccGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaa < 1:2432653‑M1/48‑13 (MQ=255) ccGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaa < 1:885153‑M1/48‑13 (MQ=255) cGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaat < 1:2255750‑M1/49‑15 (MQ=255) cGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaat < 1:1756416‑M1/49‑15 (MQ=255) gAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaat > 1:236823‑M1/1‑34 (MQ=255) aGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaata > 1:635542‑M1/1‑33 (MQ=255) tCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaata > 1:2324214‑M1/1‑31 (MQ=255) cTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaaga < 1:2011414‑M1/48‑20 (MQ=255) cTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaaga < 1:2749849‑M1/48‑20 (MQ=255) ttGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataa > 1:1389682‑M1/1‑27 (MQ=255) gtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataat < 1:712484‑M1/48‑24 (MQ=255) tgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatg > 1:1468911‑M1/1‑24 (MQ=255) aGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatcc < 1:2348789‑M1/49‑30 (MQ=255) ggAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatc > 1:1198036‑M1/1‑19 (MQ=255) gAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatccag > 1:2243797‑M1/1‑18 (MQ=255) aaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagct > 1:828841‑M1/1‑16 (MQ=255) aaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctg < 1:1361229‑M1/49‑35 (MQ=255) aaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctg < 1:1195889‑M1/49‑35 (MQ=255) aaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctgg > 1:1361677‑M1/1‑14 (MQ=255) aaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctgg > 1:267660‑M1/1‑14 (MQ=255) atCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtca > 1:1194004‑M1/1‑11 (MQ=255) tCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcat > 1:633385‑M1/1‑10 (MQ=255) aGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattc > 1:738502‑M1/1‑8 (MQ=255) aGTATGGCtcaatgatccaaataaagataatgcatccagctggtcatt < 1:2078164‑M1/48‑41 (MQ=255) gTATGGCtcaatgatccaaataaagataatgcatccagctggtcattct > 1:1019312‑M1/1‑7 (MQ=255) aTGGCtcaatgatccaaataaagataatgcatccagctggtcattct > 1:1051132‑M1/1‑5 (MQ=255) gCtcaatgatccaaataaagataatgcatccagctggtcattcttagc < 1:1124194‑M1/48‑47 (MQ=255) gCtcaatgatccaaataaagataatgcatccagctggtcattcttag > 1:22964‑M1/1‑2 (MQ=255) | GACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTC > NC_000913/3761944‑3762038 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |