| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257908 | 258683 | 776 | 41 [0] | [0] 42 | insB9–[crl] | insB9,insA9,[crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 0 (0.000) | 34 (1.110) | 28/80 | 0.0 | 100% | intergenic (+8/+16) | crl/insB9 | RNA polymerase holoenzyme assembly factor Crl/IS1 transposase B |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | RNA polymerase holoenzyme assembly factor Crl | |||||
ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAA > NC_000913/258636‑258732 | gattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaa < 1:2727255‑M2/1‑1 (MQ=255) attgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAg > 1:2279082‑M2/48‑49 (MQ=255) attgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAg < 1:2082794‑M2/2‑1 (MQ=255) ttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt > 1:964871‑M2/47‑49 (MQ=255) atcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc < 1:2187778‑M2/5‑1 (MQ=255) atcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc > 1:1991195‑M2/44‑48 (MQ=255) tcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCaa < 1:953625‑M2/7‑1 (MQ=255) tcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCaa < 1:334719‑M2/7‑1 (MQ=255) aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCa > 1:2849458‑M2/41‑46 (MQ=255) aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAg < 1:2283288‑M2/9‑1 (MQ=255) aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCa > 1:2634606‑M2/40‑45 (MQ=255) aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGa < 1:297049‑M2/10‑1 (MQ=255) aaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATa < 1:363298‑M2/12‑1 (MQ=255) aatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATaa > 1:1058215‑M2/37‑49 (MQ=255) aatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATaa > 1:254580‑M2/37‑49 (MQ=255) tttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATc < 1:1119555‑M2/15‑1 (MQ=255) tttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATc < 1:464892‑M2/15‑1 (MQ=255) tttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATc < 1:1294096‑M2/15‑1 (MQ=255) accgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGa < 1:1271159‑M2/17‑1 (MQ=255) gcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCt > 1:1633554‑M2/29‑49 (MQ=255) gcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCt < 1:13163‑M2/21‑1 (MQ=255) actaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttt > 1:2793252‑M2/27‑49 (MQ=255) actaggcacgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttt > 1:214290‑M2/27‑49 (MQ=255) taggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt > 1:2599935‑M2/25‑49 (MQ=255) ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTcttttta < 1:2009834‑M2/26‑2 (MQ=255) ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt < 1:1164656‑M2/25‑1 (MQ=255) ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc < 1:2028435‑M2/26‑1 (MQ=255) cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAt < 1:753631‑M2/29‑1 (MQ=255) gtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGt < 1:2219509‑M2/32‑1 (MQ=255) tatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTc > 1:2428198‑M2/17‑49 (MQ=255) tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTg < 1:2693992‑M2/35‑1 (MQ=255) attcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTgg > 1:2715090‑M2/14‑49 (MQ=255) ttcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTgg < 1:1818531‑M2/36‑1 (MQ=255) gtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTg > 1:2144059‑M2/10‑48 (MQ=255) tgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTa > 1:2132811‑M2/9‑49 (MQ=255) gaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAt > 1:1358432‑M2/8‑49 (MQ=255) gaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAt > 1:1948926‑M2/8‑49 (MQ=255) aaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATg > 1:38015‑M2/7‑49 (MQ=255) aaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATg > 1:2771596‑M2/7‑49 (MQ=255) gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGt > 1:406952‑M2/4‑49 (MQ=255) aAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTc > 1:572529‑M2/2‑48 (MQ=255) aGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCaa > 1:2185330/1‑49 (MQ=255) | ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAA > NC_000913/258636‑258732 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |