| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,509,562 | Δ46,201 bp | [hicB]–maeA | 43 genes [hicB], ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, rhsE, ydcD, yncO, yncI, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddJ, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1509562 | 1555762 | 46201 | 44 [0] | [0] 44 | [hicB]–maeA | [hicB],ydcR,ydcS,ydcT,ydcU,ydcV,patD,yncL,ortT,ydcY,ydcZ,mnaT,curA,mcbR,yncD,yncE,ansP,yncG,yncH,rhsE,ydcD,yncO,yncI,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,narZ,narU,yddJ,yddK,yddL,yddG,fdnG,fdnH,fdnI,yddM,adhP,maeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1509561 | 0 (0.000) | 44 (1.190) | 31/96 | 0.0 | 100% | coding (54/417 nt) | hicB | antitoxin of the HicA‑HicB toxin‑antitoxin system |
| ? | NC_000913 | 1555763 = | 0 (0.000) | intergenic (‑94/+63) | maeA/sra | malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22 | |||||
TCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGACCCAGGGCGAAACTGTCGC > NC_000913/1509516‑1509605 | tCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaa < 1:1403598‑M1/49‑4 (MQ=255) cccGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaa > 1:1030012‑M1/1‑45 (MQ=255) cccGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaa > 1:1779725‑M1/1‑45 (MQ=255) ccGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaaca < 1:1365665‑M1/49‑6 (MQ=255) tCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaa > 1:360201‑M1/1‑41 (MQ=255) aCTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaac < 1:1193261‑M1/49‑11 (MQ=255) ctctTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaaca > 1:257331‑M1/1‑38 (MQ=255) tctTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacac > 1:2144426‑M1/1‑37 (MQ=255) tctTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacac > 1:1497576‑M1/1‑37 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccat < 1:2670316‑M1/48‑16 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacacc < 1:1524956‑M1/46‑14 (MQ=255) cacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattg < 1:536089‑M1/49‑18 (MQ=255) cacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccatt < 1:1643687‑M1/48‑17 (MQ=255) acCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgc > 1:877870‑M1/1‑31 (MQ=255) acCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgc > 1:2204590‑M1/1‑31 (MQ=255) cgcCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcagg < 1:807065‑M1/49‑24 (MQ=255) gcCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggc < 1:853722‑M1/49‑25 (MQ=255) gcCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcagg > 1:1397074‑M1/1‑25 (MQ=255) ggAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaat > 1:1146238‑M1/1‑22 (MQ=255) gAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatg < 1:2180560‑M1/49‑29 (MQ=255) aaGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatgg > 1:893025‑M1/1‑20 (MQ=255) aaGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatgg > 1:1214058‑M1/1‑20 (MQ=255) aaGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatgg > 1:1160173‑M1/1‑20 (MQ=255) aGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggt < 1:1280457‑M1/49‑31 (MQ=255) aGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggt < 1:182357‑M1/49‑31 (MQ=255) ggCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtg < 1:2683179‑M1/49‑32 (MQ=255) cGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtt < 1:46068‑M1/49‑34 (MQ=255) cGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtt < 1:1737027‑M1/49‑34 (MQ=255) gTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgttta < 1:578026‑M1/49‑36 (MQ=255) ttATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaa > 1:1020240‑M1/1‑13 (MQ=255) ttATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaa > 1:796867‑M1/1‑13 (MQ=255) ttATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaa > 1:1168784‑M1/1‑13 (MQ=255) ttATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaa > 1:1114073‑M1/1‑13 (MQ=255) tataTGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaat > 1:1387059‑M1/1‑12 (MQ=255) atatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatc > 1:256754‑M1/1‑11 (MQ=255) atatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatc > 1:97829‑M1/1‑11 (MQ=255) tGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtc < 1:1927415‑M1/49‑42 (MQ=255) tGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgt < 1:1348582‑M1/48‑41 (MQ=255) ggTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtca > 1:2622162‑M1/1‑7 (MQ=255) ggTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtca > 1:2853944‑M1/1‑7 (MQ=255) gTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcat < 1:1602413‑M1/49‑44 (MQ=255) ttCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt > 1:2546392‑M1/1‑4 (MQ=255) ttCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt > 1:1019510‑M1/1‑4 (MQ=255) tCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt > 1:1256914‑M1/1‑3 (MQ=255) | TCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGACCCAGGGCGAAACTGTCGC > NC_000913/1509516‑1509605 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |