| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 819,776 | Δ62,977 bp | ybhL–deoR | 57 genes ybhL, ybhM, ybhN, clsB, ybhP, ybhQ, ybhR, ybhS, ybhF, ybhG, cecR, rhlE, ybiA, dinG, ybiB, hcxB, ybiJ, ybiI, ybiX, fiu, mcbA, rlmF, ybiO, glnQ, glnP, glnH, dps, rhtA, yliM, ompX, opgE, rybA, mntS, mntR, ybiR, ldtB, ybiT, ybiU, ybiV, ybiW, ybiY, fsaA, moeB, moeA, iaaA, gsiA, gsiB, gsiC, gsiD, pdeI, dgcI, rimO, bssR, yliI, gstB, dacC, deoR |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 819776 | 882752 | 62977 | 38 [0] | [0] 38 | ybhL–deoR | ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 819775 | NA (NA) | 38 (1.030) | 33/96 | 0.0 | 100% | noncoding (17/27 nt) | REPt74 | REPt74 |
| ? | NC_000913 | 882753 = | 0 (0.000) | intergenic (‑19/+39) | deoR/ybjG | DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase | |||||
CCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > NC_000913/882705‑882800 | aggcggcaaaacgctggtagttttttgttagccggataaggcaccgctt > 1:2722657‑M2/49‑49 (MQ=255) ggcggcaaaacgctggtagttttttgttagccggataaggcaccgcttt < 1:1136131‑M2/2‑1 (MQ=255) gcggcaaaacgctggtagttttttgttagccggataaggcaccgcttt > 1:228368‑M2/47‑48 (MQ=255) caaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc < 1:827807‑M2/7‑1 (MQ=255) caaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc > 1:648997‑M2/43‑49 (MQ=255) caaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc < 1:23312‑M2/7‑1 (MQ=255) aaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCg < 1:1203433‑M2/8‑1 (MQ=255) aacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAg > 1:1025908‑M2/40‑49 (MQ=255) cgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGcc > 1:724336‑M2/38‑49 (MQ=255) cgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGcc < 1:26129‑M2/12‑1 (MQ=255) gctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCg < 1:282415‑M2/13‑1 (MQ=255) ctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGc < 1:2128089‑M2/14‑1 (MQ=255) tggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt > 1:1239497‑M2/35‑49 (MQ=255) tggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt > 1:2313600‑M2/35‑49 (MQ=255) tagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCaa > 1:810434‑M2/32‑49 (MQ=255) gttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAta > 1:2278287‑M2/30‑49 (MQ=255) ttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtac > 1:2390438‑M2/29‑49 (MQ=255) tttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtac > 1:1207087‑M2/28‑48 (MQ=255) ttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCCAtacta > 1:1965963‑M2/27‑49 (MQ=255) ttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtact < 1:99371‑M2/22‑1 (MQ=255) ttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtact < 1:2604085‑M2/22‑1 (MQ=255) ttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTaca > 1:1963372‑M2/25‑49 (MQ=255) tgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTacac > 1:1332411‑M2/24‑49 (MQ=255) tgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTaca < 1:1819307‑M2/25‑1 (MQ=255) ttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACt < 1:594823‑M2/27‑1 (MQ=255) gccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACttttt < 1:190743‑M2/31‑1 (MQ=255) gccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt < 1:1010152‑M2/30‑1 (MQ=255) cggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg < 1:28226‑M2/33‑1 (MQ=255) gataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa < 1:1159032‑M2/35‑1 (MQ=255) ataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 1:244968‑M2/14‑46 (MQ=255) taaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:1416787‑M2/13‑47 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAgaga < 1:481592‑M2/39‑1 (MQ=255) caccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCa < 1:2794603‑M2/42‑1 (MQ=255) caccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCa < 1:1471516‑M2/42‑1 (MQ=255) caccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCa < 1:1540291‑M2/42‑1 (MQ=255) accgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAg > 1:1320382‑M2/7‑49 (MQ=255) ctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAc < 1:1913316‑M2/47‑1 (MQ=255) tTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACg > 1:108880‑M2/2‑49 (MQ=255) | CCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > NC_000913/882705‑882800 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |