| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 29 [0] | [0] 28 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 28 (0.760) | 26/96 | 0.1 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
CATTTACCGATATGCAGGGATTGTCGCTCTTCCAGCTCAGCAAATAATTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCT > NC_000913/1140940‑1141035 | aagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgt < 1:2144917‑M2/1‑1 (MQ=255) agaatttgcccgccggacggtgtaacaatggattccggcctgcagtgtt < 1:1246282‑M2/2‑1 (MQ=255) atttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGc > 1:1415501‑M2/45‑49 (MQ=255) tttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCt > 1:490943‑M2/44‑49 (MQ=255) tttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCt < 1:1925608‑M2/6‑1 (MQ=255) ccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaa > 1:430494‑M2/39‑48 (MQ=255) ccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACa < 1:1563256‑M2/14‑1 (MQ=255) ggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACata < 1:2444150‑M2/16‑1 (MQ=255) acggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat > 1:2733801‑M2/32‑48 (MQ=255) cggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCa < 1:1699944‑M2/19‑1 (MQ=255) ggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt < 1:788317‑M2/20‑1 (MQ=255) ggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt > 1:722997‑M2/30‑49 (MQ=255) taacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGaaa > 1:1650852‑M2/26‑49 (MQ=255) aacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAAc > 1:1373654‑M2/25‑49 (MQ=255) acaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAAc < 1:1716860‑M2/25‑1 (MQ=255) atgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTggg < 1:913514‑M2/29‑1 (MQ=255) gcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTa > 1:1414945‑M2/19‑49 (MQ=255) attccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATg < 1:168167‑M2/33‑1 (MQ=255) attccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATg < 1:867328‑M2/33‑1 (MQ=255) gcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGt < 1:86875‑M2/39‑1 (MQ=255) cctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTc > 1:1759883‑M2/10‑49 (MQ=255) tgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctg > 1:47193‑M2/8‑49 (MQ=255) cagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctg < 1:1401572‑M2/42‑1 (MQ=255) agtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcct < 1:2605387‑M2/45‑1 (MQ=255) gtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcctg > 1:2023426‑M2/4‑49 (MQ=255) gtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcctg > 1:1911608‑M2/4‑49 (MQ=255) gtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcctg < 1:1618472‑M2/46‑1 (MQ=255) gTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCt > 1:2683978‑M2/2‑49 (MQ=255) | CATTTACCGATATGCAGGGATTGTCGCTCTTCCAGCTCAGCAAATAATTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCT > NC_000913/1140940‑1141035 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |