Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,811,208	T→C	V92A (GTT→GCT)	tcyP →	cystine/sulfocysteine:cation symporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,811,208	0	T	C	100.0%	106.3 / NA	28	V92A (GTT→GCT)	tcyP	cystine/sulfocysteine:cation symporter
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (11/17);  total (11/17)

ATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGTTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTC  >  NC_000913/1811165‑1811252                                            |                                             aTGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGccc                                         >  1:243905/1‑49 (MQ=255) aTGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGccc                                         <  1:2234105/49‑1 (MQ=255)   gATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGt                                       >  1:117880/1‑49 (MQ=255)     tCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCt                                     <  1:1038354/49‑1 (MQ=255)       gTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTg                                    >  1:2419416/1‑48 (MQ=255)           tGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATaa                               <  1:784545/49‑1 (MQ=255)             ccGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAAc                              <  1:1908632/48‑1 (MQ=255)             ccGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAAc                              <  1:646684/48‑1 (MQ=255)             ccGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACg                             <  1:1888918/49‑1 (MQ=255)               gTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCa                           >  1:2443636/1‑49 (MQ=255)               gTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCa                           >  1:1354096/1‑49 (MQ=255)                   gTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCAtctc                       <  1:223502/49‑1 (MQ=255)                   gTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCAtct                        >  1:2431164/1‑48 (MQ=255)                        cGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGtt                   <  1:759591/48‑1 (MQ=255)                        cGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGt                    <  1:707896/47‑1 (MQ=255)                          ccTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAgg                >  1:2815907/1‑49 (MQ=255)                           ctctATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAgg                >  1:1089550/1‑48 (MQ=255)                           ctctATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGc               <  1:2129761/49‑1 (MQ=255)                           ctctATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGc               <  1:1631173/49‑1 (MQ=255)                              tATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCa              <  1:37683/47‑1 (MQ=255)                               aTTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCaaaa           >  1:2352861/1‑49 (MQ=255)                                ttCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCaaaa           <  1:2602940/48‑1 (MQ=255)                                ttCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAAt          <  1:113469/49‑1 (MQ=255)                                       cgcgGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGtttt   >  1:2287322/1‑49 (MQ=255)                                       cgcgGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGtttt   <  1:2160940/49‑1 (MQ=255)                                        gcgGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTc  <  1:2617945/49‑1 (MQ=255)                                        gcgGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTc  >  1:671869/1‑49 (MQ=255)                                        gcgGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTc  <  1:1778199/49‑1 (MQ=255)                                            |                                             ATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGTTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTC  >  NC_000913/1811165‑1811252

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑