| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 41 [0] | [0] 43 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 40 (1.490) | 34/94 | 0.0 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15346‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20564‑20610 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTC < 1:178333/49‑1CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCT < 1:1553135/48‑1 GTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTCCCTC > 1:1908746/1‑48 GAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCTCAATG > 1:645347/1‑49 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGT < 1:959918/49‑1 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATG < 1:213091/48‑1 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATG < 1:958734/48‑1 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATG < 1:1772823/48‑1 AGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTG < 1:2010984/49‑1 AGATATGCGAGCACCTGTAAAGTGGCGGGGAATACTCTACCTCCAAGTG > 1:922927/1‑49 GATATGCGAGCACCTGTAAAGTGGCGGGGAGGACCCTACCCCAATGTGT > 1:363413/1‑49 ATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTA < 1:1775210/49‑1 TATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTAT < 1:1660183/49‑1 TATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTAT < 1:406821/49‑1 ATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTTCCCCCATGTGTATC > 1:1228121/1‑49 ATGCGAGCACCTGTAAAGTGGCGGGGATAACTCTACCTCCATGTGTAT > 1:1549112/1‑48 TGCGAGCACCTGTAAAGTGGCGGGGGACACTCTACCTCCATGTGTATCA > 1:773129/1‑49 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATC < 1:451791/48‑1 CACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATAT < 1:1757726/49‑1 ACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATC < 1:2104127/49‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATAT < 1:1619628/49‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATAT < 1:1235745/49‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATAT < 1:1230706/49‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATA < 1:55089/48‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTC > 1:744147/1‑49 GTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTT < 1:1957733/49‑1 GGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTG > 1:442275/1‑49 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT < 1:319052/49‑1 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT > 1:1639406/1‑49 CGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTG < 1:1027418/49‑1 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGG > 1:628390/1‑49 GGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG < 1:1581771/49‑1 GGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:632183/1‑49 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGG < 1:805564/49‑1 ATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGA < 1:1645473/49‑1 CACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT > 1:1432702/1‑49 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC < 1:1467782/49‑1 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC > 1:1286972/1‑49 CTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT < 1:1207067/49‑1 TCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:34403/1‑49 CTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:91037/1‑48 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15346‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20564‑20610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |