| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257908 | 258683 | 776 | 33 [0] | [0] 33 | insB9–[crl] | insB9,insA9,[crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 0 (0.000) | 28 (1.230) | 22/80 | 0.0 | 100% | intergenic (+8/+16) | crl/insB9 | RNA polymerase holoenzyme assembly factor Crl/IS1 transposase B |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | RNA polymerase holoenzyme assembly factor Crl | |||||
GAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/257852‑257907‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGT > NC_000913/258684‑258729 GAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGT > 1:1645948/1‑49GAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGT > 1:1247541/1‑49 AGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTG > 1:366562/1‑48 AGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAG < 1:988287/49‑1 CAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGG > 1:1018594/1‑48 CAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGG > 1:1225520/1‑48 CAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGG > 1:1394345/1‑48 TCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAA < 1:484733/49‑1 TCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCA > 1:53179/1‑48 AAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCA > 1:66212/1‑46 AAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCA > 1:306480/1‑46 AAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCA > 1:2122125/1‑45 AATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAA < 1:1481853/49‑1 AATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAA < 1:1318462/49‑1 ATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAAT < 1:73733/49‑1 TTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATC > 1:1462307/1‑48 CGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTC > 1:77599/1‑49 GCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCT > 1:1447510/1‑49 ACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTT > 1:1564315/1‑49 CTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTT < 1:496774/49‑1 GGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCG < 1:226800/49‑1 GGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTC < 1:1643114/48‑1 GGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTC < 1:1135159/48‑1 GGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTC < 1:2115672/48‑1 GCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGA > 1:557816/1‑49 GCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGA < 1:1240712/49‑1 CCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGAT < 1:409651/49‑1 CCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATT > 1:295085/1‑49 CCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATT > 1:1233613/1‑49 CCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATT > 1:1761350/1‑49 GTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGT > 1:605899/1‑49 TATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTG > 1:546837/1‑49 TATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCT < 1:1060504/48‑1 GTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGT < 1:1837174/49‑1 GTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTG < 1:1872422/48‑1 TGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTA < 1:1944911/49‑1 TGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTA < 1:1138196/49‑1 AAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAT < 1:1965829/48‑1 AGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGC > 1:1978068/1‑49 TAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGT > 1:32431/1‑48 GAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/257852‑257907‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGT > NC_000913/258684‑258729 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |