Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 565,055 Δ21,054 bp [intD]–ompT 37 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 565055 586108 21054 27 [0] [0] 26 [intD]–ompT [intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 5650540 (0.000)25 (1.020) 23/86 0.0 100% coding (925/1164 nt) intD DLP12 prophage; putative integrase
?NC_000913 586109 = 0 (0.000)intergenic (‑476/+38) ompT/envY outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY

TCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/565006‑565054
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCA  >  NC_000913/586109‑586152
                                                                                             
TCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC                                              <  1:1371931/49‑1
  AGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCT                                            <  1:308907/49‑1
    CCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCA                                          <  1:1609011/49‑1
           GCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGC                                   >  1:1566720/1‑49
           GCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATG                                    <  1:1643566/48‑1
             CCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCC                                 <  1:661610/49‑1
              CAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCG                                <  1:1633043/49‑1
                 GTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCT                             >  1:1002578/1‑49
                  TGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTT                            <  1:1213219/49‑1
                    TGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTAT                          <  1:1990698/49‑1
                     GTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATC                         >  1:2012674/1‑49
                      TCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCC                        <  1:356698/49‑1
                          AGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTT                    <  1:1358625/49‑1
                              CATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGC                >  1:1965755/1‑49
                                TGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTT              >  1:1861267/1‑49
                                  GAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTG            >  1:1024059/1‑49
                                   AAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGC           >  1:353485/1‑49
                                   AAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGC           >  1:1533360/1‑49
                                       GGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTT       <  1:256654/49‑1
                                       GGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTT       >  1:1679320/1‑49
                                       GGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTT       >  1:939213/1‑49
                                        GAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTC      <  1:2008482/49‑1
                                         AAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCA     <  1:2058252/49‑1
                                         AAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCA     >  1:883125/1‑49
                                          AATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCAC    <  1:1958706/49‑1
                                           ATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCAC    >  1:73834/1‑48
                                             CTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCA  >  1:44626/1‑48
                                                                                             
TCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/565006‑565054
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCA  >  NC_000913/586109‑586152

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.