| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 729,365 | Δ9,598 bp | rhsC–ybfD | rhsC, ybfB, ybfO, ybfC, ybfQ, ybfL, ybfD | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 729365 | 738962 | 9598 | 40 [0] | [0] 38 | rhsC–ybfD | rhsC,ybfB,ybfO,ybfC,ybfQ,ybfL,ybfD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 729364 | 0 (0.000) | 38 (1.450) | 32/92 | 0.0 | 100% | intergenic (+24/‑219) | ybfA/rhsC | DUF2517 domain‑containing protein YbfA/rhs element protein RhsC |
| ? | NC_000913 | 738963 = | 0 (0.000) | intergenic (+110/‑38) | ybfD/ybgA | H repeat‑associated putative transposase YbfD/DUF1722 domain‑containing protein YbgA | |||||
AAAGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/729316‑729364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaCGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATGAATC > NC_000913/738963‑739007 AAAGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAA < 1:1975182/49‑1AAAGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAA < 1:226530/49‑1 AAGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAC > 1:1285481/1‑49 AGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAACG < 1:43183/49‑1 AGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAACG > 1:97229/1‑49 GGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAACGT > 1:1532720/1‑49 GCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAACGTC < 1:1278402/49‑1 GCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAACGTC < 1:395744/49‑1 CTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAACGTCTACA < 1:167598/49‑1 GTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAACGTCTACACTT < 1:1114105/49‑1 GTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAACGTCTACACT < 1:897050/48‑1 TTTATTGATTGCTGAGTTTTGAATACATTGAACGTCTACACTTACTCCT > 1:891033/1‑49 TATTGATTGCTGAGTTTTGAATACATTGAACGTCTACACTTACTCCTG < 1:89370/48‑1 TATTGATTGCTGAGTTTTGAATACATTGAACGTCTACACTTACTCCTG < 1:1667398/48‑1 ATTGATTGCTGAGTTTTGAATACATTGAACGTCTACACTTACTCCTGT > 1:1709051/1‑48 TTGATTGCTGAGTTTTGAATACATTGAACGTCTACACTTACTCCTGTAA < 1:1897858/49‑1 TGATTGCTGAGTTTTGAATACATTGAACGTCTACACTTACTCCTGTAAA > 1:1461445/1‑49 GATTGCTGAGTTTTGAATACATTGAACGTCTACACTTACTCCTGTAAAC > 1:112168/1‑49 GATTGCTGAGTTTTGAATACATTGAACGTCTACACTTACTCCTGTAAA < 1:1558114/48‑1 TGCTGAGTTTTGAATACATTGAACGTCTACACTTACTCCTGTAAACCGC > 1:106646/1‑49 AGTTTTGAATACATTGAACGTCTACACTTACTCCTGTAAACCGCTCAG > 1:1105746/1‑48 AGTTTTGAATACATTGAACGTCTACACTTACTCCTGTAAACCGCTCAG < 1:769023/48‑1 AGTTTTGAATACATTGAACGTCTACACTTACTCCTGTAAACCGCTCAG > 1:917624/1‑48 AGTTTTGAATACATTGAACGTCTACACTTACTCCTGTAAACCGCTCAG > 1:1495628/1‑48 AGTTTTGAATACATTGAACGTCTACACTTACTCCTGTAAACCGCTCA < 1:1957131/47‑1 GTTTTGAATACATTGAACGTCTACACTTACTCCTGTAAACCGCTCAGGA < 1:1213180/49‑1 GTTTTGAATACATTGAACGTCTACACTTACTCCTGTAAACCGCTCAGGA < 1:616762/49‑1 TGAATACATTGAACGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAG > 1:1222105/1‑49 GAATACATTGAACGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAG < 1:2093146/48‑1 GAATACATTGAACGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAG > 1:1821052/1‑48 AATACATTGAACGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGT < 1:1256449/48‑1 AATACATTGAACGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGT < 1:1752476/48‑1 ATACATTGAACGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAA < 1:179112/49‑1 TACATTGAACGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAAT < 1:558239/49‑1 ACATTGAACGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAAT > 1:858986/1‑48 CATTGAACGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATGA < 1:1945138/49‑1 CATTGAACGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATG < 1:1826868/48‑1 ATTGAACGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATGAA > 1:642079/1‑49 TGAACGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATGAATC > 1:965620/1‑49 GAACGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATGAATC > 1:1863054/1‑48 AAAGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/729316‑729364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaCGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATGAATC > NC_000913/738963‑739007 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |