| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 997,868 | Δ6,818 bp | [elfA]–ycbF | [elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 997868 | 1004685 | 6818 | 29 [0] | [0] 30 | [elfA]–ycbF | [elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 0 (0.000) | 29 (1.060) | 25/96 | 0.0 | 100% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 0 (0.000) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
TAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/997826‑997867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGC > NC_000913/1004686‑1004733 TAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:324234/1‑49 TTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAA > 1:1013933/1‑49 ATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAAT < 1:2080212/48‑1 TCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTC > 1:719816/1‑49 TCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATT < 1:1857954/48‑1 ATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTT > 1:1117334/1‑49 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTT < 1:1668933/48‑1 TTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTT > 1:468323/1‑49 TACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTG > 1:1274149/1‑49 TACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTT < 1:857277/48‑1 ACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGG > 1:357021/1‑49 ACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGG > 1:611791/1‑49 CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGT < 1:1695688/49‑1 CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGT > 1:1015685/1‑49 GAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTC > 1:685447/1‑49 AGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCG < 1:16646/49‑1 AGAGATCAGGATGATAACGTTTGACGCAGGTCAATTCCCTTTTGGACC > 1:498187/1‑48 GAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCG > 1:1157016/1‑48 AGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAA < 1:985183/49‑1 TCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTC < 1:742299/49‑1 TCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTC < 1:1473335/49‑1 AGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCG < 1:1998382/48‑1 AGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCG > 1:800504/1‑48 GATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCA > 1:1931226/1‑48 ATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACA > 1:451200/1‑49 ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAA < 1:1901773/49‑1 ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAA < 1:111340/49‑1 ATAACGTTTGCCGCAGGTCAATGCCCTTTTGGTCCGAACTCGCACATAA < 1:1568312/49‑1 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGC > 1:1742653/1‑49 TAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/997826‑997867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGC > NC_000913/1004686‑1004733 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |