| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,197,137 | 25956 bp→CAGATAATTCAA | [ymfD]–[ymgI] | 42 genes [ymfD], ymfE, lit, intE, xisE, ymfH, ymfI, ymfJ, ymfK, ymfT, ymfL, ymfM, oweE, ymfN, aaaE, ymfR, beeE, jayE, ymfQ, ycfK, tfaP, tfaE, stfE, pinE, mcrA, icdC, iraM, ymgK, ymgL, ycgX, bluR, bluF, ycgZ, ymgA, ariR, ymgC, pdeG, ymgF, ycgH, ymgD, ymgG, [ymgI] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1197137 | 1223092 | 25956 | 42 [0] | [0] 35 | [ymfD]–[ymgI] | [ymfD],ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,icdC,iraM,ymgK,ymgL,ycgX,bluR,bluF,ycgZ,ymgA,ariR,ymgC,pdeG,ymgF,ycgH,ymgD,ymgG,[ymgI] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1197136 | 0 (0.000) | 29 (1.420) +CAGATAATTCAA |
25/72 | 0.0 | 100% | coding (397/666 nt) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| ? | NC_000913 | 1223093 = | 0 (0.000) | coding (71/174 nt) | ymgI | uncharacterized protein YmgI | |||||
AGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1197090‑1197136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATA > NC_000913/1223093‑1223140 |||||||||||| AGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCA < 1:1812319/49‑1AGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCA < 1:1582875/49‑1 TCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATA < 1:609298/49‑1 CTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAA > 1:393115/1‑49 CTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAA > 1:1482905/1‑49 CACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT > 1:1032473/1‑49 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTC < 1:108071/49‑1 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTC < 1:258995/49‑1 CTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCA > 1:1982889/1‑48 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGC < 1:1688516/49‑1 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAG < 1:710028/48‑1 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAG < 1:2073308/48‑1 TGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCG > 1:1213690/1‑49 GATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGT > 1:1540053/1‑49 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTG < 1:131433/49‑1 TTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGG > 1:803894/1‑49 TAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCT < 1:583037/48‑1 TAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCT < 1:591085/48‑1 AGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGT > 1:1686466/1‑49 GTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGT > 1:882095/1‑48 TAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGA < 1:1050713/49‑1 AATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT > 1:1252861/1‑49 AATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT > 1:1643935/1‑49 AATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT > 1:484689/1‑49 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT < 1:833162/48‑1 CTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGA > 1:59377/1‑48 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG > 1:1504088/1‑48 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATA < 1:2061718/47‑1 GATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG < 1:1829177/46‑1 ATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAAT < 1:267142/49‑1 ATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAA < 1:1532833/48‑1 TGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAAT > 1:1730566/1‑48 GCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTA > 1:688284/1‑49 AAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGT > 1:953793/1‑49 GAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTT > 1:414730/1‑49 ACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT < 1:668940/49‑1 ATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAC > 1:1747835/1‑49 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAC < 1:569695/48‑1 GATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTG > 1:666103/1‑48 ATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAA > 1:592802/1‑49 TAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT < 1:1561896/49‑1 TTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT > 1:1780510/1‑46 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAA > 1:238820/1‑48 AAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATA < 1:1807472/49‑1 |||||||||||| AGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1197090‑1197136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATA > NC_000913/1223093‑1223140 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |