| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1299499 | 1300697 | 1199 | 29 [0] | [0] 30 | insH21 | insH21 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 24 (0.960) | 21/88 | 0.1 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
TAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1299447‑1299498‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTA > NC_000913/1300698‑1300745 TAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGC > 1:1854185/1‑49 AATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGC > 1:2117005/1‑48 ATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCT > 1:1390666/1‑48 TTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAA < 1:95038/49‑1 TTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAA < 1:1583911/49‑1 TGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAA > 1:1158621/1‑49 TGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAA > 1:548606/1‑49 AAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAAT < 1:1196279/48‑1 AAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAAT > 1:650477/1‑48 AATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAA > 1:1073767/1‑49 ATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAAT < 1:236802/49‑1 TGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATA < 1:2066602/49‑1 TATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAAT > 1:41853/1‑49 ATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATT > 1:1835393/1‑49 ATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTA < 1:1105548/49‑1 TTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAA < 1:610092/49‑1 TCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAA > 1:634017/1‑49 ACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTA > 1:701763/1‑49 TGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCA < 1:17346/48‑1 GGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATT > 1:1892401/1‑49 GGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATT > 1:219058/1‑49 GTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATT < 1:542749/48‑1 GAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCAC > 1:188178/1‑49 AAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACT < 1:1731576/49‑1 AAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTG > 1:707898/1‑49 atTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTG > 1:46006/3‑48 AGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTG > 1:1861070/1‑48 GTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGG > 1:1393731/1‑48 TGCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAA < 1:1822603/49‑1 CTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACT > 1:1330518/1‑49 AATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTA < 1:28647/49‑1 AATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGT < 1:915181/48‑1 TAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1299447‑1299498‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTA > NC_000913/1300698‑1300745 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |