| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,872,030 | Δ1,437 bp | [dgcJ] | [dgcJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1872030 | 1873466 | 1437 | 25 [0] | [0] 25 | [dgcJ] | [dgcJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1872029 | 0 (0.000) | 25 (0.930) | 22/94 | 0.1 | 100% | intergenic (+169/‑12) | cdgI/dgcJ | putative c‑di‑GMP binding protein CdgI/putative diguanylate cyclase DgcJ |
| ? | NC_000913 | 1873467 = | 0 (0.000) | coding (1427/1491 nt) | dgcJ | putative diguanylate cyclase DgcJ | |||||
CCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1871983‑1872029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAA > NC_000913/1873467‑1873512 CCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGAT > 1:1609352/1‑49 GCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGC < 1:116847/49‑1 GCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGC > 1:93505/1‑49 GCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGC < 1:1854961/49‑1 ATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTA > 1:68126/1‑49 GAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATA > 1:511999/1‑48 GAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATA > 1:1981275/1‑48 TATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTC > 1:1440747/1‑49 GTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATG < 1:1141073/48‑1 GTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATG < 1:424374/48‑1 TTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAG < 1:1435794/49‑1 TTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCG > 1:903543/1‑49 TCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCG < 1:1309036/48‑1 CTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGT < 1:293587/48‑1 GTTTCCCTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTAT < 1:1531702/49‑1 TTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATA < 1:547816/49‑1 CACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATG < 1:197977/48‑1 ACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTC < 1:564225/49‑1 CTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCA < 1:839234/49‑1 TAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAA > 1:206782/1‑49 ACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATA < 1:1937173/49‑1 AAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAG > 1:1904199/1‑47 AGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAG > 1:1445396/1‑46 GGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGA < 1:538065/49‑1 GAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAA < 1:567134/49‑1 CCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1871983‑1872029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAA > NC_000913/1873467‑1873512 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |