| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,101,397 | Δ36,321 bp | [wbbL]–wza | 34 genes [wbbL], insH‑7, wbbL, wbbK, wbbJ, wbbI, wbbH, glf, rfbX, rfbC, rfbA, rfbD, rfbB, galF, wcaM, wcaL, wcaK, wzxC, wcaJ, cpsG, cpsB, wcaI, gmm, fcl, gmd, wcaF, wcaE, wcaD, wcaC, wcaB, wcaA, wzc, wzb, wza |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2101397 | 2137717 | 36321 | 25 [0] | [0] 24 | [wbbL]–wza | [wbbL],insH‑7,wbbL,wbbK,wbbJ,wbbI,wbbH,glf,rfbX,rfbC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,wzxC,wcaJ,cpsG,cpsB,wcaI,gmm,fcl,gmd,wcaF,wcaE,wcaD,wcaC,wcaB,wcaA,wzc,wzb,wza |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2101396 | 0 (0.000) | 24 (0.890) | 20/94 | 0.1 | 100% | pseudogene (349/349 nt) | wbbL | interrupted rhamnosyltransferase WbbL |
| ? | NC_000913 | 2137718 = | 0 (0.000) | intergenic (‑475/‑184) | wza/yegH | outer membrane polysaccharide export protein Wza/inner membrane protein YegH | |||||
ATTAAAGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2101348‑2101396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCACT > NC_000913/2137718‑2137763 ATTAAAGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATAT > 1:999280/1‑49 AGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTCTC < 1:1886291/49‑1 TAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTCTCCACA > 1:891945/1‑49 TAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTCTCCACA > 1:1782000/1‑49 TAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTCTCCACA > 1:1349559/1‑49 AATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTCTCCACAT < 1:975251/48‑1 AATAGCTTATCCATGCTTATATGCTTACGGCTTTATATGTCTCCACAT < 1:1441534/48‑1 GCTTATCCATGCTTATATGCTTACGGCTTTATATGTCTCCACATGCGA < 1:1607146/48‑1 CTTATCCATGCTTATATGCTTACGGCTTTATATGTCTCCACATGCGATA < 1:1024281/49‑1 CTTATCCATGCTTATATGCTTACGGCTTTATATGTCTCCACATGCGATA > 1:1008188/1‑49 CATGCTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCT > 1:2009759/1‑48 TGCTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAA < 1:1606790/49‑1 CTTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAA < 1:1147713/48‑1 TTATATGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAAT > 1:255522/1‑48 TGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTT < 1:1190950/49‑1 TGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTT > 1:1179181/1‑49 TGCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTT < 1:1079941/49‑1 GCTTACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTT > 1:1565796/1‑49 ACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTAT < 1:1674042/48‑1 ACGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTAT > 1:468295/1‑48 CGGCTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTATT < 1:2119797/48‑1 CTTTATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTA < 1:483745/49‑1 ATATGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCAC > 1:1744940/1‑49 TATGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCACT > 1:1126695/1‑49 TATGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCAC < 1:62975/48‑1 ATTAAAGTATAAATAGCTTATCCATGCTTATATGCTTACGGCTTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2101348‑2101396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCACT > NC_000913/2137718‑2137763 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |