| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,466,545 | Δ9,634 bp | [intS]–[ypdJ] | 15 genes [intS], yfdG, yfdH, yfdI, yfdK, yfdL, yfdM, yfdN, yfdO, yfdP, yfdQ, yfdR, yfdS, [yfdT], [ypdJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2466545 | 2476178 | 9634 | 42 [0] | [0] 41 | [intS]–[ypdJ] | [intS],yfdG,yfdH,yfdI,yfdK,yfdL,yfdM,yfdN,yfdO,yfdP,yfdQ,yfdR,yfdS,[yfdT],[ypdJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2466544 | 0 (0.000) | 40 (1.460) | 33/96 | 0.0 | 100% | intergenic (+161/‑1) | argW/intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase |
| ? | NC_000913 | 2476179 = | 0 (0.000) | coding (86/141 nt) | ypdJ | CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ | |||||
ACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2466498‑2466544‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAA > NC_000913/2476179‑2476226 ACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCT < 1:1241111/48‑1 GGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTA > 1:1833952/1‑47 GGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAG < 1:361077/49‑1 GGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAG > 1:419269/1‑49 GGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAG > 1:1518877/1‑49 AAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCAT < 1:1650398/49‑1 AAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATA > 1:106684/1‑48 AAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATA > 1:32235/1‑48 AAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATA > 1:1021293/1‑48 AGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACA < 1:759707/49‑1 AGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACA < 1:2119986/49‑1 AGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATA > 1:682306/1‑47 AGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATA > 1:85610/1‑47 GTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAG < 1:684186/49‑1 AAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACA < 1:697021/49‑1 AAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACA > 1:1469559/1‑49 AATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACAC < 1:1974899/49‑1 TAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTC < 1:1081961/49‑1 TTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGAT < 1:1937811/49‑1 TTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATG < 1:985328/48‑1 TTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGAT > 1:238090/1‑47 TACCCCCCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGA < 1:1397255/48‑1 TACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGA < 1:1299077/48‑1 ACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAG < 1:2106283/48‑1 CCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGC > 1:41439/1‑49 CCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGC < 1:1806003/49‑1 CCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCC > 1:461407/1‑49 CCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCC < 1:166455/49‑1 CCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGT < 1:1864875/49‑1 CGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGT > 1:791311/1‑48 GGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCA < 1:554276/49‑1 GATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAG < 1:1784044/49‑1 GATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAG > 1:855444/1‑49 ATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGT < 1:1304847/49‑1 TTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTT > 1:1987470/1‑49 TTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTT < 1:1811794/48‑1 TTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTT < 1:2035400/48‑1 TACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCT < 1:1977566/48‑1 CCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTA < 1:841383/48‑1 CTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAA > 1:1506802/1‑49 ACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2466498‑2466544‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAA > NC_000913/2476179‑2476226 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |