Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	2,558,699	Δ6,790 bp		intZ–[eutA]	intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2558699	2565488	6790	30 [0]	[0] 28	intZ–[eutA]	intZ,yffL,yffM,yffN,yffO,yffP,yffQ,yffR,yffS,[eutA]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2558698	0 (0.000)	25 (1.100)	21/80	0.0	100%	intergenic (‑19/‑160)	eutB/intZ	ethanolamine ammonia‑lyase subunit alpha/CPZ‑55 prophage; putative phage integrase IntZ
	?	NC_000913	2565489 =	0 (0.000)					coding (1396/1404 nt)	eutA	reactivating factor for ethanolamine ammonia‑lyase EutBC

ATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2558644‑2558698 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAA  >  NC_000913/2565489‑2565535                                                                                                        ATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCT                                                        >  1:22830/1‑48    TACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAG                                                     <  1:448709/48‑1    TACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAG                                                     >  1:872952/1‑48      CATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGG                                                    >  1:1186078/1‑47       ATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAG                                                 >  1:77230/1‑49       ATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAG                                                 <  1:183114/49‑1        TTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGG                                                <  1:1785460/49‑1             GAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATG                                           >  1:1334359/1‑49             GAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATG                                           >  1:781297/1‑49             GAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATG                                           >  1:1249292/1‑49               ACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCG                                         <  1:68402/49‑1                CAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGC                                          >  1:861597/1‑47                CAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGC                                          >  1:1967581/1‑47                 AATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAG                                       >  1:1791909/1‑49                   TGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTG                                     <  1:1463806/49‑1                   TGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGT                                      >  1:1165676/1‑48                       GTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTT                                 >  1:5980/1‑49                       GTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTT                                 >  1:456541/1‑49                       GTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATT                                  <  1:981045/48‑1                        TCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTC                                <  1:880526/49‑1                            TAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCACC                             <  1:1367164/48‑1                             AGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCACCG                            <  1:780656/48‑1                              GTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGT                           >  1:691459/1‑48                               TTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCA                         >  1:1016353/1‑49                                TTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCAC                        >  1:1748183/1‑49                                   ATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGG                     >  1:927303/1‑49                                     AAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCA                   >  1:1181208/1‑49                                       GTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACA                 <  1:1312020/49‑1                                       GTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCAC                  >  1:401787/1‑48                                         CGTTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAAC               >  1:800313/1‑49                                             CCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGA            <  1:92935/48‑1                                                TCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCG        >  1:240789/1‑49                                                TCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCG        >  1:2092448/1‑49                                                      AGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAA  <  1:1931194/49‑1                                                                                                        ATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2558644‑2558698 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAA  >  NC_000913/2565489‑2565535

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.