| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,798,370 | (TTC)4→3 | coding (124‑126/405 nt) | stpA ← | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2798361 | 2798363 | 3 | 24 [0] | [0] 23 | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2798364 = | 0 (0.000) | 20 (0.900) | 19/78 | 0.1 | 100% | coding (132/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| ? | NC_000913 | = 2798360 | 0 (0.000) | coding (136/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity | |||||
GAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2798417‑2798364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagaagaaCAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCT < NC_000913/2798360‑2798315 GAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGA < 1:1557835/47‑1 AAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGA < 1:586739/49‑1 GAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAG < 1:1794688/49‑1 ATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAAC < 1:216035/49‑1 TGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACA < 1:545121/49‑1 GCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAG > 1:1567876/1‑49 GAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGC < 1:1388223/49‑1 GAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCA < 1:1937084/47‑1 AAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAG > 1:557819/1‑47 AAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGC < 1:1253884/49‑1 TTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTG < 1:1783176/49‑1 TTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTG < 1:939221/49‑1 CAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAA > 1:1123929/1‑49 GGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACT < 1:122152/49‑1 GTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGG > 1:1122688/1‑46 TCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAG < 1:266450/48‑1 CACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAG > 1:952708/1‑49 ACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAG < 1:951253/48‑1 CTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCG > 1:358723/1‑49 AAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGC > 1:2031572/1‑48 AGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAG < 1:60313/49‑1 ACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAA < 1:312848/49‑1 GTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAAT > 1:840658/1‑49 AAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAG < 1:1667428/49‑1 GAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCT > 1:2109531/1‑49 GAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCT < 1:1878571/49‑1 GAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2798417‑2798364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagaagaaCAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCT < NC_000913/2798360‑2798315 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |