| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 22 [0] | [0] 22 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 20 (0.760) +GA |
17/92 | 0.2 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110632‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > NC_000913/3136382‑3136429 || AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAG < 1:1559397/49‑1 GCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTT < 1:1140651/49‑1 CAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT < 1:1849245/49‑1 AGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT > 1:148384/1‑48 CACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAA < 1:1084088/49‑1 CTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATT < 1:2100910/49‑1 TGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATT > 1:1356775/1‑48 TGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATT > 1:421965/1‑48 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAA < 1:1743147/49‑1 TGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCA < 1:1847182/49‑1 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:1080474/1‑49 CCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATC < 1:1072113/49‑1 CCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:891396/1‑48 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCA < 1:1681465/49‑1 CGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAG < 1:418020/49‑1 AGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGA > 1:131173/1‑49 CATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 1:1653364/1‑48 ATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTT > 1:2048166/1‑48 ATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTT > 1:470680/1‑48 TAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAA < 1:2031902/49‑1 TAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAA < 1:2096914/49‑1 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC < 1:1847027/48‑1 AACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG < 1:1945546/49‑1 || AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110632‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > NC_000913/3136382‑3136429 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |