| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,628 | Δ25,538 bp | [mdtP]–[phnC] | 27 genes [mdtP], mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, [phnC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299628 | 4325165 | 25538 | 16 [0] | [0] 13 | [mdtP]–[phnC] | [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 0 (0.000) | 13 (0.470) | 12/96 | 0.7 | 100% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 0 (0.000) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
ACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4299585‑4299627‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTG > NC_000913/4325166‑4325210 ACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCA < 1:30780/49‑1 CCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAG < 1:994043/49‑1 CCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCT < 1:531016/48‑1 GCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGG < 1:274781/49‑1 GCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGG > 1:291552/1‑49 CCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCT > 1:1205123/1‑49 AGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCC < 1:1414642/49‑1 AGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCC < 1:1550613/49‑1 GATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATC > 1:1908980/1‑49 TTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTG > 1:1714874/1‑49 TCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTG < 1:487846/48‑1 CATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGG < 1:1350024/48‑1 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTG < 1:330430/49‑1 ACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4299585‑4299627‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTG > NC_000913/4325166‑4325210 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |