| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,496,676 | Δ53,036 bp | intB–fimH | 54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4496676 | 4549711 | 53036 | 41 [0] | [0] 42 | intB–fimH | intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4496675 | 0 (0.000) | 39 (1.450) | 34/94 | 0.0 | 100% | intergenic (+186/‑75) | leuX/intB | tRNA‑Leu/KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | 4549712 = | 0 (0.000) | intergenic (+2/+241) | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter | |||||
ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4496627‑4496675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC > NC_000913/4549712‑4549758 ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA < 1:1318737/49‑1 TGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAG < 1:1070940/49‑1 TTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATC < 1:1066152/49‑1 TCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA < 1:1814632/48‑1 CGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAG < 1:1096927/49‑1 CGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAG > 1:679396/1‑49 CGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACAT > 1:170694/1‑49 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATT < 1:62055/49‑1 ATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTG > 1:1153530/1‑49 ATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTG > 1:356436/1‑49 ATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTG > 1:133224/1‑49 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 1:62928/1‑49 AATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 1:75558/1‑48 AATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 1:1096434/1‑48 TGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAA > 1:630250/1‑49 GCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAAT > 1:1003976/1‑49 CTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAAT < 1:1225646/48‑1 TTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGC > 1:1341232/1‑49 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTG > 1:1685988/1‑49 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCT < 1:2013899/48‑1 TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG > 1:1392270/1‑49 TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG > 1:409138/1‑49 AACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG > 1:123836/1‑49 AACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG < 1:403324/49‑1 GAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATAT < 1:1497035/49‑1 AGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATT < 1:1525688/49‑1 AGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATAT > 1:1744672/1‑48 AGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATAT > 1:358542/1‑48 GGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTA > 1:974900/1‑49 GGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTA < 1:365711/49‑1 GGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAC > 1:1784790/1‑49 AATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT < 1:358550/49‑1 AATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT > 1:1706178/1‑49 ATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT > 1:407943/1‑48 TACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGA < 1:952688/49‑1 TACGAGAAAGCACAGGACATTGCTAATGCTGGTACGCAATATTACCTG > 1:1265329/1‑48 ACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTG > 1:792704/1‑47 CGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAG > 1:1311958/1‑49 CGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAG < 1:1002499/49‑1 CGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAA < 1:433918/48‑1 AGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC > 1:1242521/1‑48 ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4496627‑4496675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC > NC_000913/4549712‑4549758 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |