| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,555,491 | Δ41,523 bp | [yjiC]–lgoD | 37 genes [yjiC], ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, rpnD, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4555491 | 4597013 | 41523 | 36 [0] | [0] 35 | [yjiC]–lgoD | [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4555490 | 0 (0.000) | 32 (1.190) | 25/94 | 0.0 | 100% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
| ? | NC_000913 | 4597014 = | 0 (0.000) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I | |||||
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4555442‑4555490‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGG > NC_000913/4597014‑4597061 TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:1117627/49‑1 TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTA < 1:1884414/48‑1 GCTATCTGTATAACCTGAATGTTAGTCCTCATTCTTCCTGGTAGTAAGG > 1:368684/1‑49 GCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGG > 1:506617/1‑49 GCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGG > 1:1684963/1‑49 GCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGG < 1:1528018/49‑1 GCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG < 1:84719/48‑1 GCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG < 1:214125/48‑1 CTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:546904/1‑49 CTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC < 1:2015622/49‑1 TATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:218187/1‑48 TATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:2108793/1‑48 GTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT > 1:845484/1‑48 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT < 1:782248/47‑1 ATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT > 1:820164/1‑49 ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA > 1:1433648/1‑48 CCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAA < 1:420223/49‑1 AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTT < 1:1329611/48‑1 TGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCC < 1:1785152/49‑1 GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG > 1:1264941/1‑47 CTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCG > 1:1671236/1‑49 TCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGT > 1:1794832/1‑49 TCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGT > 1:351469/1‑49 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCC > 1:2085044/1‑49 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCC < 1:1213565/49‑1 TTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCG > 1:2077040/1‑49 TCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGG > 1:258246/1‑49 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGG > 1:1142446/1‑47 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGG > 1:369995/1‑47 GGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTG > 1:936962/1‑49 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGT > 1:688238/1‑49 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGT > 1:2030780/1‑49 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGT < 1:1865150/49‑1 atTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTG > 1:366903/3‑49 TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGG < 1:126725/49‑1 TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGG > 1:941084/1‑49 TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4555442‑4555490‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGG > NC_000913/4597014‑4597061 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |