| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,165,151 | Δ12,060 bp | yegP–gatY | 17 genes yegP, yegQ, cyaR, ogrK, yegZ, yegR, yegS, gatR, insE‑5, insF‑5, gatR, gatD, gatC, gatB, gatA, gatZ, gatY |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2165151 | 2177210 | 12060 | 44 [0] | [0] 44 | yegP–gatY | yegP,yegQ,cyaR,ogrK,yegZ,yegR,yegS,gatR,insE‑5,insF‑5,gatR,gatD,gatC,gatB,gatA,gatZ,gatY |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2165150 | 0 (0.000) | 43 (1.570) | 39/96 | 0.0 | 100% | intergenic (+152/‑39) | baeR/yegP | DNA‑binding transcriptional activator BaeR/DUF1508 domain‑containing protein YegP |
| ? | NC_000913 | 2177211 = | 0 (0.000) | intergenic (‑7/+301) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I | |||||
AGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGTTTTCGATACACAATTTCAATCAAGGAGTCATTATGGCTGGT > NC_000913/2165102‑2165197 | aggcaTCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGa < 1:658170/49‑1 (MQ=255) ggCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAa > 1:471597‑M1/1‑48 (MQ=255) cATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatc > 1:1788659‑M1/1‑46 (MQ=255) aTCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcc < 1:1254468‑M1/49‑5 (MQ=255) aTCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcc > 1:1896143‑M1/1‑45 (MQ=255) aaaaTCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcg > 1:914239‑M1/1‑40 (MQ=255) aaaTCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgt > 1:194560‑M1/1‑39 (MQ=255) aTCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgttt < 1:1365990‑M1/49‑13 (MQ=255) aTCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgttt > 1:1327820‑M1/1‑37 (MQ=255) tCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttg < 1:88717‑M1/49‑14 (MQ=255) cGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgt > 1:203850‑M1/1‑35 (MQ=255) gCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgtt > 1:83606‑M1/1‑34 (MQ=255) gCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgtt > 1:174350‑M1/1‑34 (MQ=255) gCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgtt < 1:1837044‑M1/49‑16 (MQ=255) aTACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttc < 1:1606429‑M1/48‑19 (MQ=255) tAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttc < 1:462447‑M1/48‑25 (MQ=255) tAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttc > 1:461287‑M1/1‑24 (MQ=255) tAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgattt < 1:1999215‑M1/47‑24 (MQ=255) aaTCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttca > 1:1622340‑M1/1‑23 (MQ=255) aTCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaa < 1:582909‑M1/49‑28 (MQ=255) aTCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaa < 1:126647‑M1/49‑28 (MQ=255) aTCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaa < 1:1847699‑M1/48‑27 (MQ=255) ggTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaata < 1:1275908‑M1/49‑31 (MQ=255) ggTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaata > 1:349781‑M1/1‑19 (MQ=255) ggTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaata < 1:1449070‑M1/49‑31 (MQ=255) gTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatat < 1:328627‑M1/49‑32 (MQ=255) tAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatat > 1:71864‑M1/1‑17 (MQ=255) aaCAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataat < 1:1339714‑M1/49‑35 (MQ=255) aaCAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataa < 1:515046‑M1/48‑34 (MQ=255) aCAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataat > 1:489564‑M1/1‑14 (MQ=255) cAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataatga < 1:175729‑M1/49‑37 (MQ=255) aGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataatgaa < 1:2036299‑M1/49‑38 (MQ=255) aGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataatga > 1:658885‑M1/1‑12 (MQ=255) aGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataatga > 1:253374‑M1/1‑12 (MQ=255) gCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataatgaaa > 1:1405054‑M1/1‑11 (MQ=255) aCCTTTAGAatcctgtcgtttgttttcgatttcaaaatataatgaaatt < 1:1355296‑M1/49‑41 (MQ=255) cTTTAGAatcctgtcgtttgttttcgatttcaaaatataatgaaattat > 1:1548977‑M1/1‑7 (MQ=255) tttAGAatcctgtcgtttgttttcgatttcaaaatataatgaaattatt > 1:1851859‑M1/1‑6 (MQ=255) tAGAatcctgtcgtttgttttcgatttcaaaatataatgaaattatttg > 1:1692273‑M1/1‑4 (MQ=255) tAGAatcctgtcgtttgttttcgatttcaaaatataatgaaattattt < 1:994469‑M1/48‑45 (MQ=255) tAGAatcctgtcgtttgttttcgatttcaaaatataatgaaattatt < 1:1145123‑M1/47‑44 (MQ=255) aGAatcctgtcgtttgttttcgatttcaaaatataatgaaattatttg < 1:1442888‑M1/48‑46 (MQ=255) gAatcctgtcgtttgttttcgatttcaaaatataatgaaattatttgtt < 1:704390‑M1/49‑48 (MQ=255) gAatcctgtcgtttgttttcgatttcaaaatataatgaaattatttgt < 1:690991‑M1/48‑47 (MQ=255) | AGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGTTTTCGATACACAATTTCAATCAAGGAGTCATTATGGCTGGT > NC_000913/2165102‑2165197 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |