| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,204,350 | Δ32,368 bp | yehL–preA | 30 genes yehL, yehM, yehP, yehQ, yehR, yehS, btsR, btsS, mlrA, yohO, yehW, yehX, yehY, osmF, bglX, dld, pbpG, yohC, yohD, yohF, mdtQ, yohP, dusC, yohJ, yohK, cdd, sanA, yeiS, preT, preA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2204350 | 2236717 | 32368 | 26 [0] | [0] 25 | yehL–preA | yehL,yehM,yehP,yehQ,yehR,yehS,btsR,btsS,mlrA,yohO,yehW,yehX,yehY,osmF,bglX,dld,pbpG,yohC,yohD,yohF,mdtQ,yohP,dusC,yohJ,yohK,cdd,sanA,yeiS,preT,preA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2204349 | 0 (0.000) | 25 (0.910) | 21/96 | 0.1 | 100% | intergenic (+60/‑247) | yehK/yehL | uncharacterized protein YehK/putative AAA(+) MoxR family ATPase YehL |
| ? | NC_000913 | 2236718 = | 0 (0.000) | intergenic (+218/+25) | preA/mglC | NAD‑dependent dihydropyrimidine dehydrogenase subunit PreA/D‑galactose/methyl‑galactoside ABC transporter membrane subunit | |||||
CTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCA > NC_000913/2236670‑2236765 | aattcaaattggtccgatccggcgcaacgtcccaatggcctggattatt > 1:2016074‑M2/49‑49 (MQ=255) attcaaattggtccgatccggcgcaacgtcccaatggcctggattatTg < 1:581715‑M2/2‑1 (MQ=255) caaattggtccgatccggcgcaacgtcccaatggcctggattatTGAcc > 1:1412595‑M2/45‑49 (MQ=255) caaattggtccgatccggcgcaacgtcccaatggcctggattatTGAc < 1:1210284‑M2/4‑1 (MQ=255) attggtccgatccggcgcaacgtcccaatggcctggattatTGACCGaa > 1:1374019‑M2/42‑49 (MQ=255) attggtccgatccggcgcaacgtcccaatggcctggattatTGACCGaa > 1:2049316‑M2/42‑49 (MQ=255) tggtccgatccggcgcaacgtcccaatggcctggattatTGACCGAATg > 1:47607‑M2/40‑49 (MQ=255) ggtccgatccggcgcaacgtcccaatggcctggattatTGACCGAATGc > 1:1077302‑M2/39‑49 (MQ=255) gatccggcgcaacgtcccaatggcctggattatTGACCGAATGCGGAcc < 1:1221648‑M2/16‑1 (MQ=255) gatccggcgcaacgtcccaatggcctggattatTGACCGAATGCGGAcc < 1:1056289‑M2/16‑1 (MQ=255) atccggcgcaacgtcccaatggcctggattatTGACCGAATGCGGACca < 1:1470832‑M2/17‑1 (MQ=255) cggcgcaacgtcccaatggcctggattatTGACCGAATGCGGACcaca < 1:1997583‑M2/19‑1 (MQ=255) cggcgcaacgtcccaatggcctggattatTGACCGAATGCGGACCACAt > 1:1681285‑M2/30‑49 (MQ=255) cggcgcaacgtcccaatggcctggattatTGACCGAATGCGGACCACAt > 1:370440‑M2/30‑49 (MQ=255) cggcgcaacgtcccaatggcctggattatTGACCGAATGCGGACCACAt < 1:1140194‑M2/20‑1 (MQ=255) cggcgcaacgtcccaatggcctggattatTGACCGAATGCGGACCACAt > 1:1082927‑M2/30‑49 (MQ=255) cgcaacgtcccaatggcctggattatTGACCGAATGCGGACCACATTca > 1:419260‑M2/27‑49 (MQ=255) cgtcccaatggcctggattatTGACCGAATGCGGACCACATTCAcatca < 1:327614‑M2/28‑1 (MQ=255) caatggcctggattatTGACCGAATGCGGACCACATTCACATCATTTCt > 1:1627589‑M2/17‑49 (MQ=255) gcctggattatTGACCGAATGCGGACCACATTCACATCATTTCTTAcgc < 1:744317‑M2/38‑1 (MQ=255) ggattatTGACCGAATGCGGACCACATTCACATCATTTCTTAcgcgcg > 1:1879774‑M2/8‑48 (MQ=255) attatTGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTAt < 1:119548‑M2/44‑1 (MQ=255) atTGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTAttt < 1:1700250‑M2/46‑1 (MQ=255) atTGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTAttt > 1:2027288‑M2/3‑48 (MQ=255) tTGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCa < 1:1433518‑M2/48‑1 (MQ=255) | CTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCA > NC_000913/2236670‑2236765 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |